Flectobacillus lacus sp. nov., isolated from a highly eutrophic pond in Korea

References

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. ( 1990; ). Basic local alignment search tool. J Mol Biol 215, 403–410.[CrossRef]
   [Google Scholar]
2. Bauer, A. W., Kirby, W. M. M., Sherris, J. C. & Turck, M. ( 1966; ). Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 45, 493–496.
   [Google Scholar]
3. Borrall, R. & Larkin, J. M. ( 1978; ). Flectobacillus marinus (Raj) comb. nov., a marine bacterium previously assigned to Microcyclus. Int J Syst Bacteriol 28, 341–343.[CrossRef]
   [Google Scholar]
4. Cole, J. R., Chai, B., Marsh, T. L. & 8 other authors ( 2003; ). The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31, 442–443.[CrossRef]
   [Google Scholar]
5. Felsenstein, J. ( 1981; ). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368–376.[CrossRef]
   [Google Scholar]
6. Fitch, W. M. ( 1971; ). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406–416.[CrossRef]
   [Google Scholar]
7. Gosink, J. J., Woese, C. R. & Staley, J. T. ( 1998; ). Polaribacter gen. nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga–Flavobacterium–Bacteroides group and reclassification of ‘Flectobacillus glomeratus’ as Polaribacter glomeratus comb. nov. Int J Syst Bacteriol 48, 223–235.[CrossRef]
   [Google Scholar]
8. Gromov, B. V. ( 1963; ). A new bacterium of the genus Microcyclus. Dokl Akad Nauk SSSR 152, 733–734 (in Russian).
   [Google Scholar]
9. Hansen, G. H. & Sørheim, R. ( 1991; ). Improved method for phenotypical characterization of marine bacteria. J Microbiol Methods 13, 231–241.[CrossRef]
   [Google Scholar]
10. Jeon, Y. S., Chung, H., Park, S., Hur, I., Lee, J. H. & Chun, J. ( 2005; ). jphydit: a java-based integrated environment for molecular phylogeny of ribosomal RNA sequences. Bioinformatics 21, 3171–3173.[CrossRef]
    [Google Scholar]
11. Jukes, T. H. & Cantor, C. R. ( 1969; ). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21–132. Edited by H. N. Munro. New York: Academic Press.
12. Kumar, S., Tamura, K. & Nei, M. ( 2004; ). mega 3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150–163.[CrossRef]
    [Google Scholar]
13. Lane, D. J. ( 1991; ). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115–175. Edited by E. Stackebrandt & M. Goodfellow. Chichester: Wiley.
14. Larkin, J. M. & Borrall, R. ( 1984; ). Genus III. Flectobacillus Larkin, Williams and Taylor 1977, 152^AL. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 129–132. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
15. Larkin, J. M., Williams, P. M. & Taylor, R. ( 1977; ). Taxonomy of the genus Microcyclus Ørskov 1928: reintroduction and emendation of the genus Spirosoma Migula 1894 and proposal of a new genus, Flectobacillus. Int J Syst Bacteriol 27, 147–156.[CrossRef]
    [Google Scholar]
16. McGuire, A. J., Franzmann, P. D. & McMeekin, T. A. ( 1987; ). Flectobacillus glomeratus sp. nov., a curved, nonmotile, pigmented bacterium isolated from antarctic marine environments. Syst Appl Microbiol 9, 265–272.[CrossRef]
    [Google Scholar]
17. Mesbah, M., Premachandran, U. & Whitman, W. B. ( 1989; ). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159–167.[CrossRef]
    [Google Scholar]
18. Nikitin, D. I., Oranskaya, M. S., Pitryuk, I. A., Chernykh, N. A. & Lysenko, A. M. ( 1994; ). A new ring-forming bacterium Arcocella aquatica gen. et sp. nov. Mikrobiologiia 63, 152–159 (in Russian).
    [Google Scholar]
19. Nikitin, D. I., Strömpl, C., Oranskaya, M. S. & Abraham, W.-R. ( 2004; ). Phylogeny of the ring-forming bacterium Arcicella aquatica gen. nov., sp. nov. (ex Nikitin et al. 1994 ), from a freshwater neuston biofilm. Int J Syst Evol Microbiol 54, 681–684.[CrossRef]
    [Google Scholar]
20. Posada, D. & Crandall, K. A. ( 1998; ). modeltest: testing the model of DNA substitution. Bioinformatics 14, 817–818.[CrossRef]
    [Google Scholar]
21. Raj, H. D. & Maloy, S. R. ( 1990; ). Proposal of Cyclobacterium marinus gen. nov., comb. nov., for a marine bacterium previously assigned to the genus Flectobacillus. Int J Syst Bacteriol 40, 337–347.[CrossRef]
    [Google Scholar]
22. Rosselló-Mora, R. & Amann, R. ( 2001; ). The species concept for prokaryotes. FEMS Microbiol Rev 25, 39–67.[CrossRef]
    [Google Scholar]
23. Saitou, N. & Nei, M. ( 1987; ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425.
    [Google Scholar]
24. Smibert, R. M. & Krieg, N. R. ( 1994; ). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607–654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
25. Stackebrandt, E. & Goebel, B. M. ( 1994; ). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846–849.[CrossRef]
    [Google Scholar]
26. Swofford, D. L. ( 1998; ). paup* – Phylogenetic Analysis Using Parsimony, version 4. Sunderland, MA: Sinauer.
27. Urakami, T. & Komagata, K. ( 1986; ). Methanol-utilizing Ancylobacter strains and comparison of their cellular fatty acid compositions and quinone systems with those of Spirosoma, Flectobacillus, and Runella species. Int J Syst Bacteriol 36, 415–421.[CrossRef]
    [Google Scholar]