1887

Abstract

A gas vacuolate bacterium, designated strain 37, was isolated from a sea ice core collected from Point Barrow, Alaska, USA. Cells of strain 37 were large (6–14 μm in length), rod-shaped, contained gas vacuoles of two distinct morphologies, and grew well at NaCl concentrations of 1–10 % and at temperatures of −12 to 10 °C. The DNA G+C content was 40 mol%. Whole-cell fatty acid analysis showed that 16 : 17 comprised 67 % of the total fatty acid content. Phylogenetic analysis of 16S rRNA gene sequences indicated that this bacterium was closely related to members of the genus , with highest sequence similarity (96.8 %) to . Phenotypic analysis differentiated strain 37 from on the basis of several characteristics, including cell morphology, growth temperature range and the ability to hydrolyse polymers. DNA–DNA hybridization experiments revealed a level of relatedness of 37 % between strain 37 and , providing further support that it represents a distinct species. The name sp. nov. is proposed for this novel species. The type strain is 37 (=CCUG 51855=CIP 108865).

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2006-05-01
2024-04-20
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References

  1. Ausubel F. M., Brent R., Kingston R. L., Moore D. D., Seidman J. G., Smith L. A., Struhl K. (editors) 1989 Current Protocols in Molecular Biology New York: Wiley;
    [Google Scholar]
  2. Bowman J. P., Nichols D. S. 2002; Aequorivita gen. nov., a member of the family Flavobacteriaceae isolated from terrestrial and marine Antarctic habitats. Int J Syst Evol Microbiol 52:1533–1541 [CrossRef]
    [Google Scholar]
  3. Bowman J. P., McCammon S. A., Brown J. L., Nichols P. D., McMeekin T. A. 1997; Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov. psychrophilic bacteria isolated from antarctic lacustrine and sea ice habitats. Int J Syst Bacteriol 47:670–677 [CrossRef]
    [Google Scholar]
  4. Bowman J. P., McCammon S. A., Lewis T., Skerratt J. H., Brown J. L., Nichols D. S., McMeekin T. A. 1998a; Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al . 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144:1601–1609 [CrossRef]
    [Google Scholar]
  5. Bowman J. P., McCammon S. A., Brown J. L., McMeekin T. A. 1998b; Glaciecola punicea gen. nov., sp. nov. and Glaciecola pallidula gen. nov., sp. nov.: psychrophilic bacteria from Antarctic sea-ice habitats. Int J Syst Bacteriol 48:1213–1222 [CrossRef]
    [Google Scholar]
  6. Bowman J. P., Gosink J. J., McCammon S. A., Lewis T. E., Nichols D. S., Nichols P. D., Skerratt J. H., Staley J. T., McMeekin T. A. 1998c; Colwellia demingiae sp. nov., Colwellia hornerae sp. nov., Colwellia rossensis sp. nov. and Colwellia psychrotropica sp. nov.: psychrophilic Antarctic species with the ability to synthesize docosahexaenoic acid (22 : 6 ω 3). Int J Syst Bacteriol 48, 1171–1180 [CrossRef]
  7. Bowman J. P., Nichols C. M., Gibson J. A. E. 2003; Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53, 1343–1355 [CrossRef]
  8. Breezee J., Cady N., Staley J. T. 2004; Subfreezing growth of the sea ice bacterium ‘ Psychromonas ingrahamii ’. Microbiol Ecol 47:300–304
    [Google Scholar]
  9. Brenner D. J., Krieg N. R., Staley J. T., Garrity G. M. (editors) 2005; Genus XII. Psychromonas , Mountfort, Rainey, Burghardt, Kaspar, and Stackebrandt 1998b, 631VP emend. In Bergey's Manual of Systematic Bacteriology vol 2B pp  278–480 New York: Springer;
    [Google Scholar]
  10. Brinkmeyer R., Knittel K., Jurgens J., Weyland H., Amann R., Helmke E. 2003; Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Appl Environ Microbiol 69:6610–6619 [CrossRef]
    [Google Scholar]
  11. Brown M. V., Bowman J. P. 2001; A molecular phylogenetic survey of sea-ice microbial communities (SIMCO). FEMS Microbiol Ecol 35:267–275 [CrossRef]
    [Google Scholar]
  12. Dyksterhouse S. E., Gray J. P., Herwig R. P., Lara J. C., Staley J. T. 1995; Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium from marine sediments. Int J Syst Bacteriol 45:116–123 [CrossRef]
    [Google Scholar]
  13. Eicken H. 1992; The role of sea ice in structuring Antarctic ecosystems. Polar Biol 12:3–13
    [Google Scholar]
  14. Garrison D. L., Ackley S. F., Buck K. R. 1983; A physical mechanism for establishing algal populations in frazil ice. Nature 306:363–365 [CrossRef]
    [Google Scholar]
  15. Gerhardt P., Murray R. G. E., Costilow R. N., Nester E. W., Wood W. A., Krieg N. R., Phillips G. B. 1981 Manual of Methods for General Bacteriology Washington, DC: American Society for Microbiology;
    [Google Scholar]
  16. Gosink J. J., Staley J. T. 1995; Biodiversity of gas vacuolate bacteria from Antarctic sea ice and water. Appl Environ Microbiol 61:3486–3489
    [Google Scholar]
  17. Gosink J. J., Irgens R. L., Staley J. T. 1993; Vertical distribution of bacteria from arctic sea ice. FEMS Microbiol Ecol 102:85–90 [CrossRef]
    [Google Scholar]
  18. Gosink J. J., Herwig R. P., Staley J. T. 1997; Octadecabacter arcticus gen. nov., sp. nov., and O. antarcticus sp. nov. nonpigmented, psychrophilic gas vacuolated bacteria from polar sea ice and water. Syst Appl Microbiol 20:356–365 [CrossRef]
    [Google Scholar]
  19. Gosink J. J., Woese C. R., Staley J. T. 1998; Polaribacter gen. nov., with three new species, P.irgensii sp. nov., P. franzmannii sp.nov. and P. filamentus sp. nov.,gas vacuolate polar marine bacteria of the Cytophaga–Flavobacterium–Bacteroides group and reclassification of ‘ Flectobacillus glomeratus ’ as comb. nov. Int J Syst Bacteriol 48:223–235 [CrossRef]
    [Google Scholar]
  20. Groudieva T., Grote R., Antranikian G. 2003; Psychromonas arctica sp. nov., a novel psychrotolerant, biofilm-producing bacterium isolated from Spitzbergen. Int J Syst Evol Microbiol 53:539–545 [CrossRef]
    [Google Scholar]
  21. Irgens R. L., Suzuki I., Staley J. T. 1989; Gas vacuolate bacteria obtained from marine waters of Antarctica. Curr Microbiol 18:261–265 [CrossRef]
    [Google Scholar]
  22. Irgens R. L., Gosink J. J., Staley J. T. 1996; Polaromonas vacuolata gen. nov., sp. nov., a psychrophilic, marine, gas vacuolate bacterium from Antarctica. Int J Syst Bacteriol 46:822–826 [CrossRef]
    [Google Scholar]
  23. Ivanova E. P., Flavier S., Christen R. 2004; Phylogenetic relationships among marine Alteromonas -like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov. and Psychromonadaceae fam. nov. Int J Syst Evol Microbiol 54:1773–1788 [CrossRef]
    [Google Scholar]
  24. Junge K., Gosink J. J., Hoppe J., Staley J. T. 1998; Arthrobacter , Brachybacterium , and Planococcus isolates identified from Antarctic sea ice brine. Description of Planococcus mcmeekinii , sp. nov. Syst Appl Microbiol 21:306–314 [CrossRef]
    [Google Scholar]
  25. Kawasaki K., Nogi Y., Hishinuma M., Nodasaka Y., Matsuyama H., Yumoto I. 2002; Psychromonas marina sp. nov., a novel halophilic, facultatively psychrophilic bacterium isolated from the coast of the Okhotsk Sea. Int J Syst Evol Microbiol 52:1455–1459 [CrossRef]
    [Google Scholar]
  26. Kumar S., Tamura K., Jakobsen I. B., Nei M. 2001; mega2: Molecular Evolutionary Genetics Analysis software. Bioinformatics 17:1244–1245 [CrossRef]
    [Google Scholar]
  27. Maykut G. A. 1985; The ice environment. In Sea Ice Biota pp  21–82 Edited by Horner R. A. Boca Raton, FL: CRC Press;
    [Google Scholar]
  28. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [CrossRef]
    [Google Scholar]
  29. MIDI 1993 Microbial Identification System Operating Manual , version 4 Newark, DE: MIDI;
    [Google Scholar]
  30. Morita R. Y. 1975; Psychrophilic bacteria. Bacteriol Rev 39:146–167
    [Google Scholar]
  31. Mountfort D. O., Rainey F. A., Burghardt J., Kaspar H. F., Stackebrandt E. 1998; Psychromonas antarcticus gen. nov., sp. nov. a new aerotolerant anaerobic, halophilic psychrophile isolated from pond sediment of the McMurdo Ice Shelf, Antarctica. Arch Microbiol 169:231–238 [CrossRef]
    [Google Scholar]
  32. Nichol S., Allison I. 1997; The frozen skin of the southern ocean. Am Sci 85:426–439
    [Google Scholar]
  33. Nogi Y., Kato C., Horikoshi K. 2002; Psychromonas kaikoae sp. nov., a novel piezophilic bacterium from the deepest cold-seep sediments in the Japan Trench. Int J Syst Evol Microbiol 52:1527–1532 [CrossRef]
    [Google Scholar]
  34. Parkinson C. L., Gloersen P. 1993; Global sea ice coverage. In Atlas of Satellite Observations Related to Global Change pp  371–383 Edited by Gurney R. J., Foster J.-L., Parkinson C. L. Cambridge: Cambridge University Press;
    [Google Scholar]
  35. Staley J. T. 1980; The gas vacuole: an early organelle of prokaryotic motility. Origins Life 10:111–116 [CrossRef]
    [Google Scholar]
  36. Staley J. T., Gosink J. J. 1999; Poles apart: biodiversity and biogeography of sea ice bacteria. Annu Rev Microbiol 53:189–215 [CrossRef]
    [Google Scholar]
  37. Staley J. T., Irgens R. L., Herwig R. P. 1989; Gas vacuolate bacteria found in Antarctic sea ice with ice algae. Appl Environ Microbiol 55:1033–1036
    [Google Scholar]
  38. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]
  39. Walsby A. E. 1972; Structure and function of gas vacuoles. Bacteriol Rev 36:1–32
    [Google Scholar]
  40. Walsby A. E. 1994; Gas vesicles. Microbiol Rev 58:94–144
    [Google Scholar]
  41. Wayne L. G., Brenner D. J., Colwell R. R. 9 other authors 1987; Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [CrossRef]
    [Google Scholar]
  42. Weeks W. F., Ackley S. F. 1982 The Growth, Structure, and Properties of Sea Ice . CRREL monograph 82-1 Hanover, NH: US Army Cold Regions Research and Engineering Laboratory;
    [Google Scholar]
  43. Xu Y., Nogi Y., Kato C., Liang Z., Ruger H.-J., De Kegel D., Glansdorff N. 2003; Psychromonas profunda sp. nov., a psychropiezophilic bacterium from deep Atlantic sediments. Int J Syst Evol Microbiol 53:527–532 [CrossRef]
    [Google Scholar]
  44. Ziemke F., Höfle M. G., Lalucat J., Rossello-Mora R. 1998; Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48:179–186 [CrossRef]
    [Google Scholar]
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