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Volume 56, Issue 1

sp. nov., isolated from a tidal flat sediment in Korea Free

Abstract

A novel -like bacterial strain, SMK-10, was isolated from a tidal flat sediment in Korea and subjected to a polyphasic taxonomic analysis. Cells of strain SMK-10 were Gram-negative, motile, greyish yellow-pigmented, curved rods. Optimal growth occurred at 25–30 °C and in the presence of 2–3 % (w/v) NaCl. Strain SMK-10 contained Q-8 as the predominant ubiquinone and C 7 and/or iso-C 2-OH, C, C and iso-C as major fatty acids. The DNA G+C content was 39·3 mol%. Phylogenetic trees based on 16S rRNA gene sequence analysis showed that strain SMK-10 belonged to the genus . 16S rRNA gene sequence similarity values (94·7–96·7 %) to the type strains of all other species and various differential phenotypic properties were sufficient to distinguish strain SMK-10 from recognized species. On the basis of its phenotypic properties and phylogenetic distinctiveness, strain SMK-10 (=KCTC 12480=DSM 17314) is classified as the type strain of a novel species, for which the name sp. nov. is proposed.

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2006-01-01
2023-12-01
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References

  1. Baumann, P. & Baumann, L.(1981). The marine Gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas, and Alcaligenes. In The Prokaryotes, pp. 1302–1331. Edited by M. P. Starr, H. Stolp, H. G. Trüper, A. Balows & H. G. Schlegel. Berlin: Springer.
  2. Bowman, J. P., Gosink, J. J., McCammon, S. A., Lewis, T. E., Nichols, D. S., Nichols, P. D., Skerratt, J. H., Staley, J. T. & McMeekin, T. A.(1998).Colwellia demingiae sp. nov., Colwellia hornerae sp. nov., Colwellia rossensis sp. nov. and Colwellia psychrotropica sp. nov.: psychrophilic Antarctic species with the ability to synthesize docosahexaenoic acid (22 : 6ω3). Int J Syst Bacteriol 48, 1171–1180.[CrossRef] [Google Scholar]
  3. Bruns, A., Rohde, M. & Berthe-Corti, L.(2001).Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 51, 1997–2006.[CrossRef] [Google Scholar]
  4. Cohen-Bazire, G., Sistrom, W. R. & Stanier, R. Y.(1957). Kinetic studies of pigment synthesis by non-sulfur purple bacteria. J Cell Comp Physiol 49, 25–68.[CrossRef] [Google Scholar]
  5. Cowan, S. T. & Steel, K. J.(1965).Manual for the Identification of Medical Bacteria. London: Cambridge University Press.
  6. D'Aoust, J. Y. & Kushner, D. J.(1972).Vibrio psychroerythrus sp. n.: classification of the psychrophilic marine bacterium, NRC 1004. J Bacteriol 111, 340–342. [Google Scholar]
  7. Deming, J. W., Somers, L. K., Straube, W. L., Swartz, D. G. & MacDonell, M. T.(1988). Isolation of an obligately barophilic bacterium and description of a new genus, Colwellia gen. nov. Syst Appl Microbiol 10, 152–160.[CrossRef] [Google Scholar]
  8. Ivanova, E. P., Flavier, S. & Christen, R.(2004). Phylogenetic relationships among marine Alteromonas-like proteobacteria: emended description of the family Alteromonadaceae and proposal of Pseudoalteromonadaceae fam. nov., Colwelliaceae fam. nov., Shewanellaceae fam. nov., Moritellaceae fam. nov., Ferrimonadaceae fam. nov., Idiomarinaceae fam. nov. and Psychromonadaceae fam. nov. Int J Syst Evol Microbiol 54, 1773–1788.[CrossRef] [Google Scholar]
  9. Komagata, K. & Suzuki, K.(1987). Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19, 161–203. [Google Scholar]
  10. Lanyi, B.(1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1–67. [Google Scholar]
  11. Leifson, E.(1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183–1184. [Google Scholar]
  12. Macián, M. C., Ludwig, W., Schleifer, K. H., Garay, E. & Pujalte, M. J.(2001).Thalassomonas viridans gen. nov., sp. nov., a novel marine γ-proteobacterium. Int J Syst Evol Microbiol 51, 1283–1289. [Google Scholar]
  13. Nogi, Y., Hosoya, S., Kato, C. & Horikoshi, K.(2004).Colwellia piezophila sp. nov., a novel piezophilic species from deep-sea sediments of the Japan Trench. Int J Syst Evol Microbiol 54, 1627–1631.[CrossRef] [Google Scholar]
  14. Sasser, M.(1990).Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids. Newark, DE: MIDI Inc.
  15. Stackebrandt, E. & Goebel, B. M.(1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846–849.[CrossRef] [Google Scholar]
  16. Staley, J. T.(1968).Prosthecomicrobium and Ancalomicrobium: new prosthecate freshwater bacteria. J Bacteriol 95, 1921–1942. [Google Scholar]
  17. Tamaoka, J. & Komagata, K.(1984). Determination of DNA base composition by reversed phase high performance liquid chromatography. FEMS Microbiol Lett 25, 125–128.[CrossRef] [Google Scholar]
  18. Yi, H., Bae, K. S. & Chun, J.(2004).Thalassomonas ganghwensis sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 54, 377–380.[CrossRef] [Google Scholar]
  19. Yoon, J.-H., Kim, H., Kim, S.-B., Kim, H.-J., Kim, W. Y., Lee, S. T., Goodfellow, M. & Park, Y.-H.(1996). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46, 502–505.[CrossRef] [Google Scholar]
  20. Yoon, J.-H., Lee, S. T. & Park, Y.-H.(1998). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. Int J Syst Bacteriol 48, 187–194.[CrossRef] [Google Scholar]
  21. Yoon, J.-H., Kang, K. H. & Park, Y.-H.(2003).Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 53, 449–454.[CrossRef] [Google Scholar]
  22. Yumoto, I., Kawasaki, K., Iwata, H., Matsuyama, H. & Okuyama, H.(1998). Assignment of Vibrio sp. strain ABE-1 to Colwellia maris sp. nov., a new psychrophilic bacterium. Int J Syst Bacteriol 48, 1357–1362.[CrossRef] [Google Scholar]
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Colwellia aestuarii sp. nov., isolated from a tidal flat sediment in Korea
Int J Syst Evol Microbiol 56, 33 (2006); https://doi.org/10.1099/ijs.0.63920-0
/content/journal/ijsem/10.1099/ijs.0.63920-0
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