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INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo International Journal of Systematic and Evolutionary Microbiology

Volume 55, Issue 6

gen. nov., sp. nov., a novel member of the phylum ‘’, and proposal of gen. nov. as a replacement for the illegitimate prokaryotic generic name Nedashkovskaya . 2003 Free

Abstract

The taxonomic position of a marine, gliding, pink-pigmented, aerobic, heterotrophic and Gram-negative bacterium was established using a polyphasic approach. 16S rRNA gene sequence analysis indicated that the strain was a member of the phylum ‘’ in which it occupied a separate lineage. The predominant cellular fatty acids were C15 : 0 iso, C17 : 0 iso 3-OH, summed feature 3 and summed feature 4. The DNA G+C content was 48·7 mol%. Phylogenetic evidence and the results of phenotypic, genotypic and chemotaxonomic analyses strongly support the assignment of the newly isolated bacterium as a member of a novel genus and species, for which the name gen. nov., sp. nov. is proposed. The type strain is KMM 6156 (=KCTC 12367=LMG 23027). It is also proposed that the illegitimate names and are replaced with and , respectively.

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Keyword(s): MK-7, menaquinone 7
SGM
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2005-11-01
2025-03-22
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References

  1. Akagawa-Matsushita M., Itoh T., Katayama Y., Kuraishi H., Yamasato K. 1992; Isoprenoid quinone composition of some marine Alteromonas, Marinomonas, Deleya , Pseudomonas and Shewanella species. J Gen Microbiol 138:2275–2281 [CrossRef]
     [Google Scholar]
  2. Bowman J. P. 2000; Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50:1861–1868
     [Google Scholar]
  3. Bowman J. P., Nichols C. M., Gibson J. A. E. 2003; Algoriphagus ratkowskyi gen. nov., sp. nov., Brumimicrobium glaciale gen. nov., sp. nov., Cryomorpha ignava gen. nov., sp. nov. and Crocinitomix catalasitica gen. nov., sp. nov., novel flavobacteria isolated from various polar habitats. Int J Syst Evol Microbiol 53:1343–1355 [CrossRef]
     [Google Scholar]
  4. Brettar I., Christen R., Höfle M. G. 2004a; Belliella baltica gen. nov., sp. nov., a novel marine bacterium of the Cytophaga – Flavobacterium – Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 54:65–70 [CrossRef]
     [Google Scholar]
  5. Brettar I., Christen R., Höfle M. G. 2004b; Aquiflexum balticum gen. nov., sp. nov., a novel marine bacterium of the Cytophaga – Flavobacterium – Bacteroides group isolated from surface water of the central Baltic Sea. Int J Syst Evol Microbiol 54:2335–2341 [CrossRef]
     [Google Scholar]
  6. Buczolits S., Denner E. B. M., Vybiral D., Wieser M., Kämpfer P., Busse H. J. 2002; Classification of three airborne bacteria and proposal of Hymenobacter aerophilus sp. nov. Int J Syst Evol Microbiol 52:445–456
     [Google Scholar]
  7. Collins M. D., Hutson R. A., Grant I. R., Patterson M. F. 2000; Phylogenetic characterization of a novel radiation-resistant bacterium from irradiated pork: description of Hymenobacter actinosclerus sp. nov. Int J Syst Evol Microbiol 50:731–734 [CrossRef]
     [Google Scholar]
  8. Felsenstein J. 1993 phylip (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences University of Washington; Seattle, USA:
     [Google Scholar]
  9. Fitch W. M., Margoliash E. 1967; Construction of phylogenetic trees. Science 155:279–284 [CrossRef]
     [Google Scholar]
  10. Hirsch P., Ludwig W., Hethke C., Sittig M., Hoffmann B., Gallikowski C. A. 1998; Hymenobacter roseosalivarius gen. nov., sp. nov. from continental Antarctica soils and sandstone: bacteria of the Cytophaga/Flavobacterium/Bacteroides line of phylogenetic descent. Syst Appl Microbiol 21:374–383 [CrossRef]
     [Google Scholar]
  11. Kim S. B., Falconer C., Williams E., Goodfellow M. 1998; Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species isolated from soil. Int J Syst Bacteriol 48:59–68 [CrossRef]
     [Google Scholar]
  12. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [CrossRef]
     [Google Scholar]
  13. Larkin J. M., Borrall R. 1984; Genus III. Flectobacillus Larkin, Williams and Taylor 1977, 152AL . In Bergey's Manual of Systematic Bacteriology vol 1 pp  129–132 Edited by Krieg N. R., Holt J. C. Baltimore: Williams & Wilkins;
     [Google Scholar]
  14. Marmur J. 1961; A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3:208–218 [CrossRef]
     [Google Scholar]
  15. Marmur J., Doty P. 1962; Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109–118 [CrossRef]
     [Google Scholar]
  16. Nedashkovskaya O. I., Suzuki M., Vysotskii M. V., Mikhailov V. V. 2003; Reichenbachia agariperforans gen. nov., sp. nov., a novel marine bacterium in the phylum Cytophaga – Flavobacterium – Bacteroides . Int J Syst Evol Microbiol 53:81–85 [CrossRef]
     [Google Scholar]
  17. Nedashkovskaya O. I., Vancanneyt M., Van Trappen S. 7 other authors 2004; Description of Algoriphagus aquimarinus sp. nov., Algoriphagus chordae sp. nov. and Algoriphagus winogradskyi sp. nov., from sea water and algae, transfer of Hongiella halophila Yi and Chun 2004 to the genus Algoriphagus as Algoriphagus halophilus comb. nov. and emended descriptions of the genera Algoriphagus Bowman et al . 2003 and Hongiella Yi and Chun 2004. Int J Syst Evol Microbiol 54:1757–1764 [CrossRef]
     [Google Scholar]
  18. Nedashkovskaya O. I., Kim S. B., Lee D. H., Lysenko A. M., Shevchenko L. S., Frolova G. M., Mikhailov V. V., Lee K. H., Bae K. S. 2005a; Roseivirga ehrenbergii gen. nov., sp. nov., a novel marine bacterium of the phylum ‘ Bacteroidetes ’, isolated from the green alga Ulva fenestrata . Int J Syst Evol Microbiol 55:231–234 [CrossRef]
     [Google Scholar]
  19. Nedashkovskaya O. I., Kim S. B., Lysenko A. M., Park M. S., Mikhailov V. V., Bae K. S., Park H. Y. 2005b; Roseivirga echinicomitans sp. nov., a novel marine bacterium isolated from the sea urchin Strongylocentrotus intermedius , and emended description of the genus Roseivirga . Int J Syst Evol Microbiol 55:1797–1800 [CrossRef]
     [Google Scholar]
  20. Nedashkovskaya O. I., Kim S. B., Lee M. S., Park M. S., Lee K. H., Lysenko A. M., Oh H. W., Mikhailov V. V., Bae K. S. 2005c; Cyclobacterium amurskyense sp. nov., a novel marine bacterium isolated from sea water. Int J Syst Evol Microbiol 55:2391–2394 [CrossRef]
     [Google Scholar]
  21. Raj H. D., Maloy S. R. 1990; Proposal of Cyclobacterium marinus gen. nov., comb. nov. for a marine bacterium previously assigned to the genus Flectobacillus . Int J Syst Bacteriol 40:337–347 [CrossRef]
     [Google Scholar]
  22. Reichenbach H. 1989; The order Cytophagales Leadbetter 1974, 99AL . In Bergey's Manual of Systematic Bacteriology vol 3 pp  2011–2073 Edited by Staley J. T., Bryant M. P., Pfennig N., Holt J. G. Baltimore: Williams & Wilkins;
     [Google Scholar]
  23. Rickard A. H., Stead A. T., O'May G. A., Lindsay S., Banner M., Handley P. S., Gilbert P. 2005; Adhaeribacter aquaticus gen. nov., sp. nov. a Gram-negative isolate from a potable water biofilm. Int J Syst Evol Microbiol 55:821–829 [CrossRef]
     [Google Scholar]
  24. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
     [Google Scholar]
  25. Van Trappen S., Vandecandelaere I., Mergaert J., Swings J. 2004; Algoriphagus antarcticus sp. nov., a novel psychrophile from microbial mats in Antarctic lakes. Int J Syst Evol Microbiol 54:1969–1973 [CrossRef]
     [Google Scholar]
  26. Yi H., Chun J. 2004; Hongiella mannitolivorans gen. nov., sp. nov., Hongiella halophila sp. nov. and Hongiella ornithinivorans sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 54:157–162 [CrossRef]
     [Google Scholar]
  27. Yoon J.-H., Yeo S.-H., Oh T.-K. 2004; Hongiella marincola sp. nov., isolated from sea water of the East Sea in Korea. Int J Syst Evol Microbiol 54:1845–1848 [CrossRef]
     [Google Scholar]
  28. Yoon J.-H., Kang S.-J., Lee C.-H., Oh T.-K. 2005a; Marinicola seohaensis gen. nov., sp. nov., isolated from sea water of the Yellow Sea, Korea. Int J Syst Evol Microbiol 55:859–863 [CrossRef]
     [Google Scholar]
  29. Yoon J.-H., Kang S.-J., Jung S.-Y., Lee C.-H., Oh T.-K. 2005b; Algoriphagus yeomjeoni sp. nov., isolated from a marine solar saltern in the Yellow Sea, Korea. Int J Syst Evol Microbiol 55:865–870 [CrossRef]
     [Google Scholar]
  30. Yoon J.-H., Kang S.-J., Oh T.-K. 2005c; Algoriphagus locisalis sp. nov., isolated from a marine solar saltern. Int J Syst Evol Microbiol 55:1635–1639 [CrossRef]
     [Google Scholar]
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Pontibacter actiniarum gen. nov., sp. nov., a novel member of the phylum ‘Bacteroidetes’, and proposal of Reichenbachiella gen. nov. as a replacement for the illegitimate prokaryotic generic name Reichenbachia Nedashkovskaya et al. 2003
Int J Syst Evol Microbiol 55, 2583 (2005); https://doi.org/10.1099/ijs.0.63819-0
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