Paracoccus koreensis sp. nov., isolated from anaerobic granules in an upflow anaerobic sludge blanket (UASB) reactor

References

1. Bae J.-W., Lee S.-T. 1999; Layered structure of UASB granules gives microbial population resistance to toxic chemicals. Biotechnol Lett 21:159–162 [CrossRef]
   [Google Scholar]
2. Bae J.-W., Rhee S.-K., Hyun S.-H., Kim I. S., Lee S.-T. 2000; Layered structure of granules in upflow anaerobic sludge blanket reactor gives microbial populations resistance to metal ions. Biotechnol Lett 22:1935–1940 [CrossRef]
   [Google Scholar]
3. Berry A., Janssens D., Hümbelin M. 10 other authors 2003; Paracoccus zeaxanthinifaciens sp. nov., a zeaxanthin-producing bacterium. Int J Syst Evol Microbiol 53:231–238 [CrossRef]
   [Google Scholar]
4. Buck J. D. 1982; Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl Environ Microbiol 44:992–993
   [Google Scholar]
5. Cappuccino J. G., Sherman N. 2002 Microbiology: a Laboratory Manual , 6th edn. San Francisco: Pearson Education;
   [Google Scholar]
6. Daneshvar M. I., Hollis D. G., Weyant R. S. 11 other authors 2003; Paracoccus yeeii sp. nov. (formerly CDC group EO-2), a novel bacterial species associated with human infection. J Clin Microbiol 41:1289–1294 [CrossRef]
   [Google Scholar]
7. Davis D. H., Doudoroff M., Stanier R. Y., Mandel M. 1969; Proposal to reject the genus Hydrogenomonas : taxonomic implications. Int J Syst Bacteriol 19:375–390 [CrossRef]
   [Google Scholar]
8. de Zeeuw W. J., Lettinga G. 1980; Use of anaerobic digestion for wastewater treatment. Antonie van Leeuwenhoek 46:110–112 [CrossRef]
   [Google Scholar]
9. Ezaki T., Hashimoto Y., Yabuuchi E. 1989; Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229 [CrossRef]
   [Google Scholar]
10. Felsenstein J. 1985; Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [CrossRef]
    [Google Scholar]
11. Fukuzaki S., Chang Y. J., Nishio N., Nagai S. 1991; Characteristics of granular methanogenic sludges grown on lactate in a UASB reactor. J Ferment Bioeng 72:465–472 [CrossRef]
    [Google Scholar]
12. Hall T. A. 1999; BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
    [Google Scholar]
13. Harker M., Hirschberg J., Oren A. 1998; Paracoccus marcusii sp. nov., an orange Gram-negative coccus. Int J Syst Bacteriol 48:543–548 [CrossRef]
    [Google Scholar]
14. Im W.-T., Kang M.-S., Park H.-Y., Kim M.-K., Lee S.-T. 2003; Culturable bacterial strain's diversity of environmental samples. In Proceedings of the International Meeting of the Federation of Korean Microbiological Societies , abstract B4023p– 165 Seoul: Federation of Korean Microbiological Societies;
    [Google Scholar]
15. Im W.-T., Bae H.-S., Yokota A., Lee S. T. 2004; Herbaspirillum chlorophenolicum sp. nov., a 4-chlorophenol-degrading bacterium. Int J Syst Evol Microbiol 54:851–855 [CrossRef]
    [Google Scholar]
16. Kimura M. 1983 The Neutral Theory of Molecular Evolution Cambridge: Cambridge University Press;
    [Google Scholar]
17. Komagata K., Suzuki K. 1987; Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–203
    [Google Scholar]
18. Kumar S., Tamura K., Jacobsen I.-B., Nei M. 2001; mega2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244–1245 [CrossRef]
    [Google Scholar]
19. Lettinga G. 1995; Anaerobic digestion and wastewater treatment systems. Antonie van Leeuwenhoek 67:3–28 [CrossRef]
    [Google Scholar]
20. MacLeod F. A., Guiot S. R., Costerton J. W. 1990; Layered structure of biological aggregates produced in an upflow anaerobic sludge bed and filter reactor. Appl Environ Microbiol 56:1598–1607
    [Google Scholar]
21. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [CrossRef]
    [Google Scholar]
22. Pukall R., Laroche M., Kroppenstedt R. M., Schumann P., Stackebrandt E., Ulber R. 2003; Paracoccus seriniphilus sp. nov., an l-serine-dehydratase-producing coccus isolated from the marine bryozoan Bugula plumosa . Int J Syst Evol Microbiol 53:443–447 [CrossRef]
    [Google Scholar]
23. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
24. Sasser M. 1990; Identification of bacteria by gas chromatography of cellular fatty acids . MIDI Technical Note 101: Newark, DE: MIDI;
    [Google Scholar]
25. Schmidt J. E., Ahring B. K. 1996; Acetate and hydrogen metabolism in intact and disintegrated granules from an acetate-fed, 55 °C, UASC reactor. Biotechnol Bioeng 49:229–246
    [Google Scholar]
26. Shen C. F., Kosaric N., Blaszczyk R. 1993; The effect of selected heavy metals (Ni, Co and Fe) on anaerobic granules and their extracellular polymeric substance (EPS. Water Res 27:25–33 [CrossRef]
    [Google Scholar]
27. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]