Novel mycolic acid-containing bacteria in the family Segniliparaceae fam. nov., including the genus Segniliparus gen. nov., with descriptions of Segniliparus rotundus sp. nov. and Segniliparus rugosus sp. nov.

References

1. Berd D. 1973; Laboratory identification of clinically important aerobic actinomycetes. Appl Microbiol 25:665–681
   [Google Scholar]
2. Brenner D. J., Hickman-Brenner F. W., Lee J. V. 7 other authors 1983; Vibrio furnissii (formerly aerogenic biogroup of Vibrio fluvialis ), a new species isolated from human feces and the environment. J Clin Microbiol 18:816–824
   [Google Scholar]
3. Butler W. R., Guthertz L. S. 2001; Mycolic acid analysis by high-performance liquid chromatography for identification of Mycobacterium species. Clin Microbiol Rev 14:704–726 [CrossRef]
   [Google Scholar]
4. Butler W. R., Ahearn D. G., Kilburn J. O. 1986; High-performance liquid chromatography of mycolic acids as a tool in the identification of Corynebacterium , Nocardia , Rhodococcus , and Mycobacterium species. J Clin Microbiol 23:182–185
   [Google Scholar]
5. Butler W. R., O'Connor S. P., Yakrus M. A. 8 other authors 1993; Mycobacterium celatum sp. nov. Int J Syst Bacteriol 43:539–548 [CrossRef]
   [Google Scholar]
6. Butler W. R., Floyd M. M., Silcox V. & 9 other authors 1996 Standardized method for HPLC identification of mycobacteria Atlanta, GA: Centers for Disease Control and Prevention;
   [Google Scholar]
7. Cole J., Chai R. B., Marsh T. L. 8 other authors 2003; The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31:442–443 [CrossRef]
   [Google Scholar]
8. Dobson G., Minnikin D. E., Minnikin S. M., Parlett J. H., Goodfellow M., Ridell M., Magnusson M. 1985; Systematic analysis of complex mycobacterial lipids. In Chemical Methods in Bacterial Systematics pp  237–265 Edited by Goodfellow M., Minnikin D. E. London: Academic Press;
   [Google Scholar]
9. Felsenstein J. 1993 phylip (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences University of Washington; Seattle, USA:
   [Google Scholar]
10. Floyd M. M., Guthertz L. S., Silcox V. A., Duffey P. S., Jang Y., Desmond E. P., Crawford J. T., Butler W. R. 1996; Characterization of a SAV organism and proposal of Mycobacterium triplex sp. nov. J Clin Microbiol 34:2963–2967
    [Google Scholar]
11. Floyd M. M., Gross W. M., Bonato D. A., Silcox V. A., Smithwick R. W., Metchock B., Crawford J. T., Butler W. R. 2000; Mycobacterium kubicae sp. nov., a slowly growing, scotochromogenic Mycobacterium . Int J Syst Evol Microbiol 50:1811–1816
    [Google Scholar]
12. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules. In Mammalian Protein Metabolism pp  21–132 Edited by Munro H. N. New York: Academic Press;
    [Google Scholar]
13. Kent P. T., Kubica G. P. 1985 Public Health Mycobacteriology; a Guide for the Level III Laboratory Atlanta, GA: Centers for Disease Control, US Department of Health and Human Services;
    [Google Scholar]
14. Ladrón N., Fernández M., Agüero J., González Zörn B., Vázquez-Boland J. A., Navas J. 2003; Rapid identification of Rhodococcus equi by a PCR assay targeting the choE gene. J Clin Microbiol 41:3241–3245 [CrossRef]
    [Google Scholar]
15. Lapage S. P., Sneath P. H. A., Lessel E. F., Skerman V. B. D., Seeliger H. P. R., Clark W. A. (editors) 1992 International Code of Nomenclature of Bacteria (1990 Revision). Bacteriological Code Washington, DC: American Society for Microbiology;
    [Google Scholar]
16. Lasker B. A., Brown J. M., McNeil M. M. 1992; Identification and epidemiological typing of clinical and environmental isolates of the genus Rhodococcus with use of a digoxigenin-labelled rDNA gene probe. Clin Infect Dis 15:223–233 [CrossRef]
    [Google Scholar]
17. Lechevalier M. P., Horan A. C., Lechevalier H. 1971; Lipid composition in the classification of nocardiae and mycobacteria. J Bacteriol 105:313–318
    [Google Scholar]
18. Lévy-Frébault V., Goh K.-S., David H. L. 1986; Mycolic acid analysis for clinical identification of Mycobacterium avium and related mycobacteria. J Clin Microbiol 24:835–839
    [Google Scholar]
19. Loeffelholz M. J., Scholl D. R. 1989; Method for improved extraction of DNA from Nocardia asteroides . J Clin Microbiol 27:1880–1881
    [Google Scholar]
20. Mandel M., Igambi L., Bergendahl J., Dodson M. L. Jr, Scheltgen E. 1970; Correlation of melting temperature and cesium chloride buoyant density of bacterial deoxyribonucleic acid. J Bacteriol 101:333–338
    [Google Scholar]
21. McMinn E. J. G., Alderson G., Dodson H. I., Goodfellow M., Ward A. C. 2000; Genomic and phenomic differentiation of Rhodococcus equi and related strains. Antonie van Leeuwenhoek 78:331–340 [CrossRef]
    [Google Scholar]
22. Minnikin D. E., Alshamaony L., Goodfellow M. 1975; Differentiation of Mycobacterium , Nocardia , and related taxa by thin-layer chromatographic analysis of whole-organism methanolysates. J Gen Microbiol 88:200–204 [CrossRef]
    [Google Scholar]
23. Minnikin D. E., Dobson G., Goodfellow M., Draper P., Magnusson M. 1985a; Quantitative comparison of the mycolic and fatty acid compositions of Mycobacterium leprae and Mycobacterium gordonae . J Gen Microbiol 131:2013–2021
    [Google Scholar]
24. Minnikin D. E., Minnikin S. M., Parlett J. H., Goodfellow M. 1985b; Mycolic acid patterns of some rapidly-growing species of Mycobacterium . Zentralbl Bakteriol Mikrobiol Hyg A 259:446–460
    [Google Scholar]
25. NCCLS 2003 Susceptibility testing of mycobacteria, nocardiae, and other aerobic actinomycetes . Approved standard. NCCLS document M24-A Wayne, PA: National Committee for Clinical Laboratory Standards;
    [Google Scholar]
26. Rainey F. A., Burghardt J., Kroppenstedt R. M., Klatte S., Stackebrandt E. 1995; Phylogenetic analysis of the genera Rhodococcus and Nocardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species. Microbiology 141:523–528 [CrossRef]
    [Google Scholar]
27. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
28. Stackebrandt E., Smida J., Collins M. D. 1988; Evidence of phylogenetic heterogeneity within the genus Rhodococcus ; revival of the genus Gordona (Tsukamura. J Gen Appl Microbiol 34:341–348 [CrossRef]
    [Google Scholar]
29. Stackebrandt E., Rainey F. A., Ward-Rainey N. L. 1997; Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47:479–491 [CrossRef]
    [Google Scholar]
30. Stackebrandt E., Frederiksen W., Garrity G. M. 10 other authors 2002; Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52:1043–1047 [CrossRef]
    [Google Scholar]
31. Staneck J. L., Roberts G. D. 1974; Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28:226–231
    [Google Scholar]
32. Steingrube V. A., Wilson R. W., Brown B. A., Jost K. C. Jr, Blacklock Z., Gibson J. L., Wallace R. J. Jr 1997; Rapid identification of clinically significant species and taxa of aerobic actinomycetes, including Actinomadura , Gordona , Nocardia , Rhodococcus , Streptomyces , and Tsukamurella isolates, by DNA amplification and restriction endonuclease analysis. J Clin Microbiol 35:817–822
    [Google Scholar]
33. Takayama K., Qureshi N., Jordi H. C., Schnoes H. K. 1979; Separation of homologous series of mycolic acids from Mycobacterium tuberculosis H37Ra by high performance liquid chromatography. In Biological/Biomedical Applications of Liquid Chromatography pp  91–101 Edited by Hawk G. L. New York: Marcel Dekker;
    [Google Scholar]
34. Wayne L. G., Brenner D. J., Colwell R. R. 9 other authors 1987; Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [CrossRef]
    [Google Scholar]
35. Weyant R. S., Moss W., Weaver R. E., Hollis D. G., Jordan J. J., Cook E. C., Daneshvar M. I. 1996 Identification of Unusual Pathogenic Gram Negative Aerobic and Facultatively Anaerobic Bacteria , 2nd edn. Baltimore: Williams & Wilkins;
    [Google Scholar]
36. Yassin A. F., Rainey F. A., Brzezinka H., Burghardt J., Lee H. J., Schaal K. P. 1995; Tsukamurella inchonensis sp. nov. Int J Syst Bacteriol 45:522–527 [CrossRef]
    [Google Scholar]
37. Yassin A. F., Rainey F. A., Burghardt J. 8 other authors 1997; Tsukamurella tyrosinosolvens sp. nov. Int J Syst Bacteriol 47:607–614 [CrossRef]
    [Google Scholar]