Gramella echinicola gen. nov., sp. nov., a novel halophilic bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius

References

1. Alain K., Olagnon M., Desbruyéres D., Pagé A., Barbier G., Junifer S. K., Quérellou M., Cambon-Bonavita M.-A. 2002; Phylogenetic characterization of the bacterial assemblage associated with mucous secretions of the hydrothermal vent polychaete Paralvinella palmiformis . FEMS Microbiol Ecol 42:463–476 [CrossRef]
   [Google Scholar]
2. Bowman J. P. 2000; Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50:1861–1868
   [Google Scholar]
3. Bowman J. P., McCammon S. A., Lewis T., Skerratt J. H., Brown J. L., Nichols D. S., McMeekin T. A. 1998; Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense (Dobson et al . 1993) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144:1601–1609 [CrossRef]
   [Google Scholar]
4. Cooney R. P., Pantos O., Le Tisser M. D. A., Barer M. R., O'Donnell A. G., Bythell J. C. 2002; Characterization of the bacterial consortium associated with black band disease in coral using molecular microbiological techniques. Environ Microbiol 4:401–413 [CrossRef]
   [Google Scholar]
5. Dobson S. J., Colwell R. R., McMeekin T. A., Franzmann P. D. 1993; Direct sequencing of the polymerase chain reaction-amplified 16S rRNA gene of Flavobacterium gondwanense sp. nov. and Flavobacterium salegens sp. nov., two new species from a hypersaline Antarctic lake. Int J Syst Bacteriol 43:77–83 [CrossRef]
   [Google Scholar]
6. Felsenstein J. 1993 phylip (phylogeny inference package), version 3.5c Department of Genetics, University of Washington; Seattle, USA:
   [Google Scholar]
7. Glöckner F. O., Fuchs B. M., Amann R. 1999; Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65:3721–3726
   [Google Scholar]
8. Hanzawa N., Nakanishi K., Nishijima M., Saga N. 1998; 16S rDNA-based phylogenetic analysis of marine flavobacteria that induce algal morphogenesis. J Mar Biotechnol 6:80–82
   [Google Scholar]
9. Kim S. B., Falconer C., Williams E., Goodfellow M. 1998; Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species isolated from soil. Int J Syst Bacteriol 48:59–68 [CrossRef]
   [Google Scholar]
10. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [CrossRef]
    [Google Scholar]
11. López-García P., Gaill F., Moreira D. 2002; Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila . Environ Microbiol 4:204–215 [CrossRef]
    [Google Scholar]
12. Marmur J. 1961; A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3:208–218 [CrossRef]
    [Google Scholar]
13. Marmur J., Doty P. 1962; Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109–118 [CrossRef]
    [Google Scholar]
14. McCammon S. A., Bowman J. P. 2000; Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp.nov., and Flavobacterium xanthum sp. nov., nom.rev. and reclassification of [ Flavobacterium ] salegens as Salegentibacter salegens gen. nov., comb. nov. Int J Syst Evol Microbiol 50:1055–1063 [CrossRef]
    [Google Scholar]
15. Nedashkovskaya O. I., Kim S. B., Han S. K. 7 other authors 2003a; Mesonia algae gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from the green alga Acrosiphonia sonderi (Kütz) Kornm. Int J Syst Evol Microbiol 53:1967–1971 [CrossRef]
    [Google Scholar]
16. Nedashkovskaya O. I., Suzuki M., Vysotskii M. V., Mikhailov V. V. 2003b; Reichenbachia agariperforans gen. nov., sp. nov. a novel marine bacterium in the phylum Cytophaga–Flavobacterium–Bacteroides . Int J Syst Evol Microbiol 53:81–85 [CrossRef]
    [Google Scholar]
17. Nedashkovskaya O. I., Suzuki M., Vancanneyt M., Cleenwerck I., Zhukova N. V., Vysotskii M. V., Mikhailov V. V., Swings J. 2004; Salegentibacter holothuriorum sp. nov., isolated from edible holothurian Apostichopus japonicus . Int J Syst Evol Microbiol 54:1107–1110 [CrossRef]
    [Google Scholar]
18. Patel P., Callow M. E., Joint I., Callow J. A. 2003; Specificity in the settlement – modifying response of bacterial biofilms towards zoospores of the marine alga. Enteromorpha . Environ Microbiol 5:338–349 [CrossRef]
    [Google Scholar]
19. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
20. Webster N. S., Negri A. P., Munro M. M., Battershill C. N. 2004; Diverse microbial communities inhabit Antarctic sponges. Environ Microbiol 6:288–300 [CrossRef]
    [Google Scholar]