1887

Abstract

A strictly aerobic, non-motile, rod-shaped actinomycete, designated strain JC2056, was isolated from a sediment sample of getbol, the tidal flat of Korea. Results of 16S rRNA gene sequence analysis indicated that the isolate belonged to the genus , with the highest similarity being to KCTC 9575 (95·7 %). The major menaquinone was MK-8(H), and predominant cellular fatty acids were iso-16 : 0 and iso-16 : 1 H. The DNA G+C content was 70 mol%. Based on the morphological, physiological, biochemical and chemotaxonomical data presented in this study, strain JC2056 should be classified as a novel species, for which the name sp. nov. is proposed; the type strain is JC2056 (=IMSNU 14029=KCTC 9921=JCM 12125).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.63192-0
2004-11-01
2019-12-09
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/54/6/ijs542151.html?itemId=/content/journal/ijsem/10.1099/ijs.0.63192-0&mimeType=html&fmt=ahah

References

  1. Chun, J. & Goodfellow, M. ( 1995; ). A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45, 240–245.[CrossRef]
    [Google Scholar]
  2. Collins, M. D., Cockcroft, S. & Wallbanks, S. ( 1994; ). Phylogenetic analysis of a new ll-diaminopimelic acid-containing coryneform bacterium from herbage, Nocardioides plantarum sp. nov. Int J Syst Bacteriol 44, 523–526.[CrossRef]
    [Google Scholar]
  3. Lawson, P. A., Collins, M. D., Schumann, P., Tindall, B. J., Hirsch, P. & Labrenz, M. ( 2000; ). New ll-diaminopimelic acid-containing actinomycetes from hypersaline, heliothermal and meromictic Antarctic Ekho Lake: Nocardioides aquaticus sp. nov. and Friedmanniella [correction of Friedmannielly] lacustris sp. nov. Syst Appl Microbiol 23, 219–229.[CrossRef]
    [Google Scholar]
  4. O'Donnell, A. G., Goodfellow, M. & Minnikin, D. E. ( 1982; ). Lipids in the classification of Nocardioides: reclassification of Arthrobacter simplex (Jensen) Lochhead in the genus Nocardioides (Prauser) emend. O'Donnell et al. as Nocardioides simplex comb. nov. Arch Microbiol 133, 323–329.[CrossRef]
    [Google Scholar]
  5. Prauser, H. ( 1976; ). Nocardioides, a new genus of the order Actinomycetales. Int J Syst Bacteriol 26, 58–65.[CrossRef]
    [Google Scholar]
  6. Prauser, H. ( 1986; ). Genus Nocardioides Prauser 1976 , 61 AL . In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1481–1485. Edited by P. H. A. Sneath, N. S. Nair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
  7. Stackebrandt, E. & Goebel, B. M. ( 1994; ). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846–849.[CrossRef]
    [Google Scholar]
  8. Staneck, J. L. & Roberts, G. D. ( 1974; ). Simplified approach to the identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226–231.
    [Google Scholar]
  9. Suzuki, K.-I. & Komagata, K. ( 1983; ). Pimelobacter gen. nov., a new genus of coryneform bacteria with ll-diaminopimelic acid in the cell wall. J Gen Appl Microbiol 29, 59–71.[CrossRef]
    [Google Scholar]
  10. Swofford, D. L. ( 1998; ). Phylogenetic analysis using parsimony (PAUP). Version 4. Sunderland, MA: Sinauer Associates.
  11. Yi, H. & Chun, J. ( 2004; ). Nocardioides ganghwensis sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 54, 1295–1299.[CrossRef]
    [Google Scholar]
  12. Yoon, J.-H., Rhee, S.-K., Lee, J.-S., Park, Y.-H. & Lee, S. T. ( 1997; ). Nocardioides pyridinolyticus sp. nov., a pyridine-degrading bacterium isolated from the oxic zone of an oil shale column. Int J Syst Bacteriol 47, 933–938.[CrossRef]
    [Google Scholar]
  13. Yoon, J.-H., Cho, Y.-G., Lee, S. T., Suzuki, K., Nakase, T. & Park, Y.-H. ( 1999; ). Nocardioides nitrophenolicus sp. nov., a p-nitrophenol-degrading bacterium. Int J Syst Bacteriol 49, 675–680.[CrossRef]
    [Google Scholar]
  14. Yoon, J.-H., Kim, I.-G., Kang, K. H., Oh, T.-K. & Park, Y.-H. ( 2003; ). Nocardioides aquiterrae sp. nov., isolated from groundwater in Korea. Int J Syst Evol Microbiol 54, 71–75.
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.63192-0
Loading
/content/journal/ijsem/10.1099/ijs.0.63192-0
Loading

Data & Media loading...

Most Cited This Month

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error