sp. nov., sp. nov., sp. nov. and sp. nov., isolated from human stomach mucosa Free

Abstract

In an attempt to study the composition of the flora from mucosa of human stomach, 16S rRNA gene sequences of 129 isolates were analysed. For 15 of these, the results differed significantly from known sequences, and additional tests were performed to determine whether these isolates represented as yet unrecognized species. Phenotypic and genetic characteristics revealed that these isolates represented four novel species. Two belong to the and the other two to the subgroup of . The names sp. nov., sp. nov., sp. nov. and sp. nov. are proposed, with the respective type strains Kx156A7 (=LMG 22113=DSM 16045=CCUG 48454), Kx146A4 (=LMG 22111=DSM 16041=CCUG 48456), Kx127A2 (=LMG 22115=DSM 16043=CCUG 48459) and Kx146C1 (=LMG 22117=DSM 16047=CCUG 48460).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.63083-0
2005-01-01
2024-03-29
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/55/1/ijs550077.html?itemId=/content/journal/ijsem/10.1099/ijs.0.63083-0&mimeType=html&fmt=ahah

References

  1. Baele M., Vancanneyt M., Devriese L. A., Lefebvre K., Swings J., Haesebrouck F. 2003; Lactobacillus ingluviei sp. nov., isolated from the intestinal tract of pigeons. Int J Syst Evol Microbiol 53:133–136 [CrossRef]
    [Google Scholar]
  2. Bohak I., Back W., Richter L., Ehrmann M., Ludwig W., Schleifer K. H. 1998; Lactobacillus amylolyticus sp. nov., isolated from beer malt and beer wort. Syst Appl Microbiol 21:360–364 [CrossRef]
    [Google Scholar]
  3. Cashion P., Holder-Franklin M. A., McCully J., Franklin M. 1977; A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81:461–466 [CrossRef]
    [Google Scholar]
  4. De Ley J., Cattoir H., Reynaerts A. 1970; The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142 [CrossRef]
    [Google Scholar]
  5. Felsenstein J. 1993 phylip (Phylogeny Inference Package), version 3.5c. Distributed by the author Department of Genetics, University of Washington; Seattle, USA:
    [Google Scholar]
  6. Fujisawa T., Itoh K., Benno Y., Mitsuoka T. 1990; Lactobacillus intestinalis (ex Hemme 1974) sp. nov., nom. rev., isolated from the intestines of mice and rats. Int J Syst Bacteriol 40:302–304
    [Google Scholar]
  7. Fujisawa T., Benno Y., Yaeshima T., Mitsuoka T. 1992; Taxonomic study of the Lactobacillus acidophilus group, with recognition of Lactobacillus gallinarum sp. nov. and Lactobacillus johnsonii sp. nov. and synonymy of Lactobacillus acidophilus group A3 (Johnson et al . 1980) with the type strain of Lactobacillus amylovorus (Nakamura 1981). Int J Syst Bacteriol 42:487–491 [CrossRef]
    [Google Scholar]
  8. Gregersen T. 1978; A rapid method for distinction of Gram-negative from Gram-positive bacteria. Eur J Appl Microbiol Biotechnol 5:123–127 [CrossRef]
    [Google Scholar]
  9. Hammes W. P., Weiss N., Holzapfel W. 1992; The genera Lactobacillus and Carnobacterium . In The Prokaryotes , 2nd edn. pp  1535–1594 Edited by Balows A., Trüper H. G., Dworkin M., Harder W., Schleifer K.-H. Springer; New York:
    [Google Scholar]
  10. Huß V. A. R., Festl H., Schleifer K. H. 1983; Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184–192 [CrossRef]
    [Google Scholar]
  11. Kandler O., Weiss N. 1986; Genus Lactobacillus Beijerinck 1901, 212AL . In Bergey's Manual of Systematic Bacteriology vol 2 pp  1209–1234 Edited by Sneath P. H. A., Mair N. S., Sharpe M. E., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
  12. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [CrossRef]
    [Google Scholar]
  13. Müller M. R. A., Ehrmann M. A., Vogel R. F. 2000; Lactobacillus frumenti sp. nov., a new lactic acid bacterium isolated from rye-bran fermentations with a long fermentation period. Int J Syst Evol Microbiol 50:2127–2133 [CrossRef]
    [Google Scholar]
  14. Niamsup P., Sujaya I. N., Tanaka M. 8 other authors 2003; Lactobacillus thermotolerans sp. nov., a novel thermotolerant species isolated from chicken faeces. Int J Syst Evol Microbiol 53:263–268 [CrossRef]
    [Google Scholar]
  15. Nikolaitchouk N., Wacher C., Falsen E., Andersch B., Collins M. D., Lawson P. A. 2001; Lactobacillus coleohominis sp. nov., isolated from human sources. Int J Syst Evol Microbiol 51:2081–2085 [CrossRef]
    [Google Scholar]
  16. Page R. D. M. 1996; treeview: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357–358
    [Google Scholar]
  17. Pot B., Vandamme P., Kersters K. 1994; Analysis of electrophoretic whole-organism protein fingerprints. In Chemical Methods in Prokaryotic Systematics pp  493–521 Edited by Goodfellow M., O'Donnell A. G. Chichester: Wiley;
    [Google Scholar]
  18. Roos S., Karner F., Axelsson L., Jonsson H. 2000; Lactobacillus mucosae sp. nov., a new species with in vitro mucus-binding activity isolated from pig intestine. Int J Syst Evol Microbiol 50:251–258 [CrossRef]
    [Google Scholar]
  19. Schleifer K. H. 1985; Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18:123–156
    [Google Scholar]
  20. Schleifer K. H., Kandler O. 1972; Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407–477
    [Google Scholar]
  21. Thompson J. D., Higgins D. G., Gibson T. J. 1994; clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680 [CrossRef]
    [Google Scholar]
  22. Vogel R. F., Böcker G., Stolz P. 7 other authors 1994; Identification of lactobacilli from sourdough and description of Lactobacillus pontis sp. nov. Int J Syst Bacteriol 44:223–229 [CrossRef]
    [Google Scholar]
  23. Wayne L. G., Brenner D. J., Colwell R. R. 9 other authors 1987; Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [CrossRef]
    [Google Scholar]
  24. Weizenegger M., Neumann M., Stackebrandt E., Weiss N., Ludwig W. 1992; Eubacterium alactolyticum phylogenetically groups with Eubacterium limosum , Acetobactericum woodii and Clostridum barkeri . Syst Appl Microbiol 15:32–36
    [Google Scholar]
  25. Wiese B. G., Strohmar W., Rainey F. A., Diekmann H. 1996; Lactobacillus panis sp. nov., from sourdough with a long fermentation period. Int J Syst Bacteriol 46:449–453 [CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.63083-0
Loading
/content/journal/ijsem/10.1099/ijs.0.63083-0
Loading

Data & Media loading...

Most cited Most Cited RSS feed