1887

Abstract

A hitherto unknown anaerobic bacillus isolated from sinus pus in a young child (strain AIP 354.02) was characterized by using phenotypic and genotypic methods. 16S rRNA gene sequence analysis indicated that this strain was phylogenetically affiliated with several sequences of cloned 16S rRNA gene inserts previously deposited in the public databases. According to their 16S rRNA gene sequence similarities, these uncultivated bacteria, together with strain AIP 354.02, formed a separate subgroup belonging to the family ‘’ within the phylum . gen. nov. is proposed for this group of organisms and gen. nov. sp. nov. for strain AIP 354.02 (=CIP 107991=CCUG 48084).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.63060-0
2004-09-01
2019-10-18
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/54/5/ijs541611.html?itemId=/content/journal/ijsem/10.1099/ijs.0.63060-0&mimeType=html&fmt=ahah

References

  1. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. ( 1997; ). Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25, 3389–3402.[CrossRef]
    [Google Scholar]
  2. Bryant, M. P. ( 1986a; ). Genus XIII. Lachnospira Bryant and Small 1956, 24. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1375–1376. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
  3. Bryant, M. P. ( 1986b; ). Genus IV. Butyrivibrio Bryant and Small 1956, 18, emend. Moore, Johnson and Holdeman 1976, 241AL. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1376–1379. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
  4. Carlier, J.-P. ( 1985; ). Gas chromatography of fermentation products: its application in diagnosis of anaerobic bacteria. Bull Inst Pasteur 83, 57–69.
    [Google Scholar]
  5. Cato, E. P., George, W. L. & Finegold, S. M. ( 1986; ). Genus Clostridium Prazmowski 1880, 23. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 1141–1200. Edited by P. H. A. Sneath, N. S. Mair, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
  6. Cornick, N. A., Jensen, N. S., Stahl, D. A., Hartman, P. A. & Allison, M. J. ( 1994; ). Lachnospira pectinoschiza sp. nov., an anaerobic pectinophile from the pig intestine. Int J Syst Bacteriol 44, 87–93.[CrossRef]
    [Google Scholar]
  7. Downes, J., Munson, M. A., Radford, D. R., Spratt, D. A. & Wade, W. G. ( 2002; ). Shuttleworthia satelles gen. nov., sp. nov., isolated from the human oral cavity. Int J Syst Evol Microbiol 52, 1469–1475.[CrossRef]
    [Google Scholar]
  8. Engelkirk, P. G., Duben-Engelkirk, J. & Dowell, V. R. ( 1992; ). Principles and Practice of Clinical Anaerobic Bacteriology. Belmont: Star Publishing Company.
  9. Felsenstein, J. ( 1993; ). phylip (Phylogeny Inference Package), version 3.5c. Distributed by the author. Department of Genetics, University of Washington, Seattle, USA.
  10. Holdeman, L. V., Cato, E. P. & Moore, W. E. C. ( 1977; ). Anaerobe Laboratory Manual, 4th edn. Blacksburg, VA: Virginia Polytechnic Institute and State University.
  11. Jukes, T. H. & Cantor, R. R. ( 1969; ). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21–132. Edited by H. N. Munro. New York: Academic Press.
  12. Munson, M. A., Pitt-Ford, T., Chong, B., Weightman, A. & Wade, W. G. ( 2002; ). Molecular and cultural analysis of the microflora associated with endodontic infections. J Dent Res 81, 761–766.[CrossRef]
    [Google Scholar]
  13. Paster, B. J., Boches, S. K., Galvin, J. L., Ericson, R. E., Lau, C. N., Levanos, V. A., Sahasrabudhe, A. & Dewhirst, F. E. ( 2001; ). Bacterial diversity in human subgingival plaque. J Bacteriol 183, 3770–3783.[CrossRef]
    [Google Scholar]
  14. Rolph, H. J., Lennon, A., Riggio, M. P., Saunders, W. P., MacKenzie, D., Coldero, L. & Bagg, J. ( 2001; ). Molecular identification of microorganisms from endodontic infections. J Clin Microbiol 39, 3282–3289.[CrossRef]
    [Google Scholar]
  15. Thompson, J. D., Higgins, D. G. & Gibson, T. J. ( 1994; ). clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673–4680.[CrossRef]
    [Google Scholar]
  16. Veys, A., Callewaert, W., Waelkens, E. & Van den Abbeele, K. ( 1989; ). Application of gas-liquid chromatography to the routine identification of nonfermenting Gram-negative bacteria in clinical specimens. J Clin Microbiol 27, 1538–1542.
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.63060-0
Loading
/content/journal/ijsem/10.1099/ijs.0.63060-0
Loading

Data & Media loading...

Most Cited This Month

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error