1887

Abstract

A novel, obligately chemolithoautotrophic, sulfur-oxidizing bacterial strain, designated strain gps52, was isolated from a rock sample collected near the hydrothermal vents of the Suiyo Seamount in the Pacific Ocean. The cells possessed a Gram-stain-negative-type cell wall and contained menaquinone-8(H) and menaquinone-9(H) as respiratory quinones, and Cω7, C and Cω7 as major cellular fatty acids. Neither storage compounds nor extensive internal membranes were observed in the cells. Strain gps52 grew using carbon dioxide fixation and oxidation of inorganic sulfur compounds with oxygen as electron acceptor. Optimal growth was observed at 32 °C, pH 6.5 and with 3 % (w/v) NaCl. Phylogenetic analyses based on 16S rRNA gene sequences indicated that strain gps52 belongs to the family and is different from any other known bacteria, with sequence similarities of less than 93 %. Based on phenotypic and phylogenetic findings, the isolate is considered to represent a novel genus and species in the family , and the name gen. nov., sp. nov. is proposed. The type strain is gps52 ( = NBRC 101260 = DSM 19610). An emended description of the genus is also proposed.

Funding
This study was supported by the:
  • Ministry of Education, Culture, Sports, Science & Technology Japan (MEXT)
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2015-01-01
2024-04-20
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References

  1. Adachi J., Hasegawa M. ( 1995 ). Improved dating of the human/chimpanzee separation in the mitochondrial DNA tree: heterogeneity among amino acid sites. . J Mol Evol 40, 622628. [View Article] [PubMed]
    [Google Scholar]
  2. Banciu H., Sorokin D. Y., Galinski E. A., Muyzer G., Kleerebezem R., Kuenen J. G. ( 2004 ). Thialkalivibrio halophilus sp. nov., a novel obligately chemolithoautotrophic, facultatively alkaliphilic, and extremely salt-tolerant, sulfur-oxidizing bacterium from a hypersaline alkaline lake. . Extremophiles 8, 325334. [View Article] [PubMed]
    [Google Scholar]
  3. Brinkhoff T., Muyzer G., Wirsen C. O., Kuever J. ( 1999 ). Thiomicrospira chilensis sp. nov., a mesophilic obligately chemolithoautotrophic sulfuroxidizing bacterium isolated from a Thioploca mat. . Int J Syst Bacteriol 49, 875879. [View Article] [PubMed]
    [Google Scholar]
  4. Dubilier N., Bergin C., Lott C. ( 2008 ). Symbiotic diversity in marine animals: the art of harnessing chemosynthesis. . Nat Rev Microbiol 6, 725740. [View Article] [PubMed]
    [Google Scholar]
  5. Durand P., Reysenbach A.-L., Prieur D., Pace N. ( 1993 ). Isolation and characterization of Thiobacillus hydrothermalis sp. nov., a mesophilic obligately chemolithotrophic bacterium isolated from a deep-sea hydrothermal vent in Fiji Basin. . Arch Microbiol 159, 3944. [View Article]
    [Google Scholar]
  6. Glasby G. P., Iizasa K., Yuasa M., Usui A. ( 2000 ). Submarine hydrothermal mineralization on the Izu-Bonin Arc, south of Japan: an overview. . Marine Georesources Geotechnology 18, 141176. [View Article]
    [Google Scholar]
  7. Hallberg K. B., Hedrich S., Johnson D. B. ( 2011 ). Acidiferrobacter thiooxydans, gen. nov. sp. nov.; an acidophilic, thermo-tolerant, facultatively anaerobic iron- and sulfur-oxidizer of the family Ectothiorhodospiraceae . . Extremophiles 15, 271279. [View Article] [PubMed]
    [Google Scholar]
  8. Hanada S., Takaichi S., Matsuura K., Nakamura K. ( 2002 ). Roseiflexus castenholzii gen. nov., sp. nov., a thermophilic, filamentous, photosynthetic bacterium that lacks chlorosomes. . Int J Syst Evol Microbiol 52, 187193.[PubMed] [CrossRef]
    [Google Scholar]
  9. Hasegawa M., Kishino H., Yano T. A. ( 1985 ). Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. . J Mol Evol 22, 160174. [View Article] [PubMed]
    [Google Scholar]
  10. Hattori S., Kamagata Y., Hanada S., Shoun H. ( 2000 ). Thermacetogenium phaeum gen. nov., sp. nov., a strictly anaerobic, thermophilic, syntrophic acetate-oxidizing bacterium. . Int J Syst Evol Microbiol 50, 16011609. [View Article] [PubMed]
    [Google Scholar]
  11. Heising S., Richter L., Ludwig W., Schink B. ( 1999 ). Chlorobium ferrooxidans sp. nov., a phototrophic green sulfur bacterium that oxidizes ferrous iron in coculture with a “Geospirillum” sp. strain. . Arch Microbiol 172, 116124. [View Article] [PubMed]
    [Google Scholar]
  12. Hirayama H., Sunamura M., Takai K., Nunoura T., Noguchi T., Oida H., Furushima Y., Yamamoto H., Oomori T., Horikoshi K. ( 2007 ). Culture-dependent and -independent characterization of microbial communities associated with a shallow submarine hydrothermal system occurring within a coral reef off Taketomi Island, Japan. . Appl Environ Microbiol 73, 76427656. [View Article] [PubMed]
    [Google Scholar]
  13. Hoeft S. E., Blum J. S., Stolz J. F., Tabita F. R., Witte B., King G. M., Santini J. M., Oremland R. S. ( 2007 ). Alkalilimnicola ehrlichii sp. nov., a novel, arsenite-oxidizing haloalkaliphilic gammaproteobacterium capable of chemoautotrophic or heterotrophic growth with nitrate or oxygen as the electron acceptor. . Int J Syst Evol Microbiol 57, 504512. [View Article] [PubMed]
    [Google Scholar]
  14. Holding A. J., Collee J. G. ( 1971 ). Routine biochemical tests. . Methods Microbiol 6, 132. [View Article]
    [Google Scholar]
  15. Imhoff J. F. ( 2005a ). Family I. Chromatiaceae Bavendamm 1924, 125AL emend. Imhoff 1984b, 339. . In Bergey’s Manual of Systematic Bacteriolgy, , 2nd edn., vol. 2, Part B, pp. 39. Edited by Brenner D. J., Krieg N. R., Staley J. T., Garrity G. M. . New York:: Springer;.
    [Google Scholar]
  16. Imhoff J. F. ( 2005b ). Family I. Ectothiorhodospiraceae Imhoff 1984b, 339VP . . In Bergey’s Manual of Systematic Bacteriolgy, vol. 2, Part B, pp. 4143. Edited by Brenner D. J., Krieg N. R., Staley J. T., Garrity G. M. . New York:: Springer;.
    [Google Scholar]
  17. Inagaki F., Takai K., Kobayashi H., Nealson K. H., Horikoshi K. ( 2003 ). Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing ϵ-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough. . Int J Syst Evol Microbiol 53, 18011805. [View Article] [PubMed]
    [Google Scholar]
  18. Inagaki F., Takai K., Nealson K. H., Horikoshi K. ( 2004 ). Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the ϵ-Proteobacteria isolated from Okinawa Trough hydrothermal sediments. . Int J Syst Evol Microbiol 54, 14771482. [View Article] [PubMed]
    [Google Scholar]
  19. Ito T., Sugita K., Yumoto I., Nodasaka Y., Okabe S. ( 2005 ). Thiovirga sulfuroxydans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxidizing bacterium isolated from a microaerobic waste-water biofilm. . Int J Syst Evol Microbiol 55, 10591064. [View Article] [PubMed]
    [Google Scholar]
  20. Kamagata Y., Mikami E. ( 1991 ). Isolation and characterization of a novel thermophilic Methanosaeta strain. . Int J Syst Bacteriol 41, 191196. [View Article]
    [Google Scholar]
  21. Kelly D. P., Wood A. P. ( 2005 ). Family III. Halothiobacillaceae fam. nov. Kelly and Wood 2003. . In Bergey’s Manual of Systematic Bacteriolgy, vol. 2, Part B, pp. 5859. Edited by Brenner D. J., Krieg N. R., Staley J. T., Garrity G. M. . New York:: Springer;.
    [Google Scholar]
  22. Kurilenko V. V., Christen R., Zhukova N. V., Kalinovskaya N. I., Mikhailov V. V., Crawford R. J., Ivanova E. P. ( 2010 ). Granulosicoccus coccoides sp. nov., isolated from leaves of seagrass (Zostera marina). . Int J Syst Evol Microbiol 60, 972976. [View Article] [PubMed]
    [Google Scholar]
  23. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. & other authors ( 2007 ). clustal w and clustal_x version 2.0. . Bioinformatics 23, 29472948. [View Article] [PubMed]
    [Google Scholar]
  24. Lee K., Lee H. K., Choi T. H., Kim K. M., Cho J. C. ( 2007 ). Granulosicoccaceae fam. nov., to include Granulosicoccus antarcticus gen. nov., sp. nov., a non-phototrophic, obligately aerobic chemoheterotroph in the order Chromatiales, isolated from Antarctic seawater. . J Microbiol Biotechnol 17, 14831490.[PubMed]
    [Google Scholar]
  25. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S. & other authors ( 2004 ). arb: a software environment for sequence data. . Nucleic Acids Res 32, 13631371. [View Article] [PubMed]
    [Google Scholar]
  26. Mori K., Suzuki K. ( 2008 ). Thiofaba tepidiphila gen. nov., sp. nov., a novel obligately chemolithoautotrophic, sulfur-oxidizing bacterium of the Gammaproteobacteria isolated from a hot spring. . Int J Syst Evol Microbiol 58, 18851891. [View Article] [PubMed]
    [Google Scholar]
  27. Mori K., Kim H., Kakegawa T., Hanada S. ( 2003 ). A novel lineage of sulfate-reducing microorganisms: Thermodesulfobiaceae fam. nov., Thermodesulfobium narugense, gen. nov., sp. nov., a new thermophilic isolate from a hot spring. . Extremophiles 7, 283290. [View Article] [PubMed]
    [Google Scholar]
  28. Mori K., Kakegawa T., Higashi Y., Nakamura K., Maruyama A., Hanada S. ( 2004 ). Oceanithermus desulfurans sp. nov., a novel thermophilic, sulfur-reducing bacterium isolated from a sulfide chimney in Suiyo Seamount. . Int J Syst Evol Microbiol 54, 15611566. [View Article] [PubMed]
    [Google Scholar]
  29. Mori K., Maruyama A., Urabe T., Suzuki K., Hanada S. ( 2008 ). Archaeoglobus infectus sp. nov., a novel thermophilic, chemolithoheterotrophic archaeon isolated from a deep-sea rock collected at Suiyo Seamount, Izu-Bonin Arc, western Pacific Ocean. . Int J Syst Evol Microbiol 58, 810816. [View Article] [PubMed]
    [Google Scholar]
  30. Mori K., Suzuki K., Urabe T., Sugihara M., Tanaka K., Hamada M., Hanada S. ( 2011 ). Thioprofundum hispidum sp. nov., an obligately chemolithoautotrophic sulfur-oxidizing gammaproteobacterium isolated from the hydrothermal field on Suiyo Seamount, and proposal of Thioalkalispiraceae fam. nov. in the order Chromatiales . . Int J Syst Evol Microbiol 61, 24122418. [View Article] [PubMed]
    [Google Scholar]
  31. Nakagawa Y., Yamasato K. ( 1993 ). Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis. . J Gen Microbiol 139, 11551161. [View Article] [PubMed]
    [Google Scholar]
  32. Nakagawa T., Ishibashi J., Maruyama A., Yamanaka T., Morimoto Y., Kimura H., Urabe T., Fukui M. ( 2004 ). Analysis of dissimilatory sulfite reductase and 16S rRNA gene fragments from deep-sea hydrothermal sites of the Suiyo Seamount, Izu-Bonin Arc, Western Pacific. . Appl Environ Microbiol 70, 393403. [View Article] [PubMed]
    [Google Scholar]
  33. Nunoura T., Takaki Y., Kazama H., Hirai M., Ashi J., Imachi H., Takai K. ( 2012 ). Microbial diversity in deep-sea methane seep sediments presented by SSU rRNA gene tag sequencing. . Microbes Environ 27, 382390. [View Article] [PubMed]
    [Google Scholar]
  34. Park S. J., Pham V. H., Jung M. Y., Kim S. J., Kim J. G., Roh D. H., Rhee S. K. ( 2011 ). Thioalbus denitrificans gen. nov., sp. nov., a chemolithoautotrophic sulfur-oxidizing gammaproteobacterium, isolated from marine sediment. . Int J Syst Evol Microbiol 61, 20452051. [View Article] [PubMed]
    [Google Scholar]
  35. Powers E. M. ( 1995 ). Efficacy of the Ryu nonstaining KOH technique for rapidly determining Gram reactions of food-borne and waterborne bacteria and yeasts. . Appl Environ Microbiol 61, 37563758.[PubMed]
    [Google Scholar]
  36. Sievert S. M., Heidorn T., Kuever J. ( 2000 ). Halothiobacillus kellyi sp. nov., a mesophilic, obligately chemolithoautotrophic, sulfur-oxidizing bacterium isolated from a shallow-water hydrothermal vent in the Aegean Sea, and emended description of the genus Halothiobacillus . . Int J Syst Evol Microbiol 50, 12291237. [View Article] [PubMed]
    [Google Scholar]
  37. Sorokin D. Y., Gorlenko V. M., Tourova T. P., Tsapin A. I., Nealson K. H., Kuenen G. J. ( 2002a ). Thioalkalimicrobium cyclicum sp. nov. and Thioalkalivibrio jannaschii sp. nov., novel species of haloalkaliphilic, obligately chemolithoautotrophic sulfur-oxidizing bacteria from hypersaline alkaline Mono Lake (California). . Int J Syst Evol Microbiol 52, 913920. [View Article] [PubMed]
    [Google Scholar]
  38. Sorokin D. Y., Tourova T. P., Lysenko A. M., Mityushina L. L., Kuenen J. G. ( 2002b ). Thioalkalivibrio thiocyanoxidans sp. nov. and Thioalkalivibrio paradoxus sp. nov., novel alkaliphilic, obligately autotrophic, sulfur-oxidizing bacteria capable of growth on thiocyanate, from soda lakes. . Int J Syst Evol Microbiol 52, 657664. [View Article] [PubMed]
    [Google Scholar]
  39. Sorokin D. Y., Tourova T. P., Sjollema K. A., Kuenen J. G. ( 2003 ). Thialkalivibrio nitratireducens sp. nov., a nitrate-reducing member of an autotrophic denitrifying consortium from a soda lake. . Int J Syst Evol Microbiol 53, 17791783. [View Article] [PubMed]
    [Google Scholar]
  40. Sorokin D. Y., Tourova T. P., Antipov A. N., Muyzer G., Kuenen J. G. ( 2004 ). Anaerobic growth of the haloalkaliphilic denitrifying sulfur-oxidizing bacterium Thialkalivibrio thiocyanodenitrificans sp. nov. with thiocyanate. . Microbiology 150, 24352442. [View Article] [PubMed]
    [Google Scholar]
  41. Sorokin D. Y., Tourova T. P., Braker G., Muyzer G. ( 2007a ). Thiohalomonas denitrificans gen. nov., sp. nov. and Thiohalomonas nitratireducens sp. nov., novel obligately chemolithoautotrophic, moderately halophilic, thiodenitrifying Gammaproteobacteria from hypersaline habitats. . Int J Syst Evol Microbiol 57, 15821589. [View Article] [PubMed]
    [Google Scholar]
  42. Sorokin D. Y., Trotsenko Y. A., Doronina N. V., Tourova T. P., Galinski E. A., Kolganova T. V., Muyzer G. ( 2007b ). Methylohalomonas lacus gen. nov., sp. nov. and Methylonatrum kenyense gen. nov., sp. nov., methylotrophic gammaproteobacteria from hypersaline lakes. . Int J Syst Evol Microbiol 57, 27622769. [View Article] [PubMed]
    [Google Scholar]
  43. Sorokin D. Y., Tourova T. P., Muyzer G., Kuenen G. J. ( 2008 ). Thiohalospira halophila gen. nov., sp. nov. and Thiohalospira alkaliphila sp. nov., novel obligately chemolithoautotrophic, halophilic, sulfur-oxidizing gammaproteobacteria from hypersaline habitats. . Int J Syst Evol Microbiol 58, 16851692. [View Article] [PubMed]
    [Google Scholar]
  44. Sorokin D. Y., Muntyan M. S., Panteleeva A. N., Muyzer G. ( 2012 ). Thioalkalivibrio sulfidiphilus sp. nov., a haloalkaliphilic, sulfur-oxidizing gammaproteobacterium from alkaline habitats. . Int J Syst Evol Microbiol 62, 18841889. [View Article] [PubMed]
    [Google Scholar]
  45. Sunamura M., Higashi Y., Miyako C., Ishibashi J., Maruyama A. ( 2004 ). Two bacteria phylotypes are predominant in the Suiyo seamount hydrothermal plume. . Appl Environ Microbiol 70, 11901198. [View Article] [PubMed]
    [Google Scholar]
  46. Takai K., Inagaki F., Nakagawa S., Hirayama H., Nunoura T., Sako Y., Nealson K. H., Horikoshi K. ( 2003 ). Isolation and phylogenetic diversity of members of previously uncultivated epsilon-Proteobacteria in deep-sea hydrothermal fields. . FEMS Microbiol Lett 218, 167174.[PubMed]
    [Google Scholar]
  47. Takai K., Nealson K. H., Horikoshi K. ( 2004 ). Hydrogenimonas thermophila gen. nov., sp. nov., a novel thermophilic, hydrogen-oxidizing chemolithoautotroph within the ϵ-Proteobacteria, isolated from a black smoker in a Central Indian Ridge hydrothermal field. . Int J Syst Evol Microbiol 54, 2532. [View Article] [PubMed]
    [Google Scholar]
  48. Takai K., Miyazaki M., Nunoura T., Hirayama H., Oida H., Furushima Y., Yamamoto H., Horikoshi K. ( 2006 ). Sulfurivirga caldicuralii gen. nov., sp. nov., a novel microaerobic, thermophilic, thiosulfate-oxidizing chemolithoautotroph, isolated from a shallow marine hydrothermal system occurring in a coral reef, Japan. . Int J Syst Evol Microbiol 56, 19211929. [View Article] [PubMed]
    [Google Scholar]
  49. Takai K., Miyazaki M., Hirayama H., Nakagawa S., Querellou J., Godfroy A. ( 2009 ). Isolation and physiological characterization of two novel, piezophilic, thermophilic chemolithoautotrophs from a deep-sea hydrothermal vent chimney. . Environ Microbiol 11, 19831997. [View Article] [PubMed]
    [Google Scholar]
  50. Tamura K., Stecher G., Peterson D., Filipski A., Kumar S. ( 2013 ). mega6: molecular evolutionary genetics analysis version 6.0. . Mol Biol Evol 30, 27252729. [View Article] [PubMed]
    [Google Scholar]
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