1887

Abstract

A novel Gram-stain-positive, moderately halophilic bacterium, designated strain B6B, was isolated from the water of an Iranian hypersaline lake, Aran-Bidgol, and characterized taxonomically using a polyphasic approach. Cells of strain B6B were rod-shaped, motile and produced ellipsoidal endospores in terminal positions in non-swollen sporangia. Strain B6B was a strictly aerobic bacterium and catalase- and oxidase-positive. The strain was able to grow at NaCl concentrations of 0.5–20.0 % (w/v), with optimum growth occurring at 10.0 % (w/v) NaCl. The optimum temperature and pH for growth were 35 °C and pH 7.0. On the basis of 16S rRNA gene sequence analysis, strain B6B was shown to belong to the phylum and its closest phylogenetic similarities were with the species BH30097 (97.5 %), YIM 93624 (97.4 %), EN8d (96.8 %), NHBX5 (96.6 %), LMG 20964 (96.3 %) and YIM-C158 (96.0 %), respectively. Phylogenetic analysis revealed that strain B6B, along with BH30097 and YIM 93624, clustered in a separate clade in the family . The DNA G+C content of the novel isolate was 35.8 mol%. DNA–DNA hybridization experiments revealed low levels of relatedness between strain B6Band BH30097 (13 %) and YIM 93624 (33 %). The major cellular fatty acid of strain B6B was anteiso-C (75.1 %) and its polar lipid pattern consisted of phosphatidylglycerol, diphosphatidylglycerol, an unknown phospholipid and an unknown glycolipid. The isoprenoid quinones were MK-7 (90 %) and MK-6 (3 %). The peptidoglycan contained -diaminopimelic acid as the diagnostic diamino acid. All of these features support the placement of isolate B6B within the phylum . It is closely related to and , but with features that clearly distinguish it from species of the genus or of other related genera. On the basis of the polyphasic evidence derived in this study, we propose that strain B6B be placed within a new genus, as gen. nov., sp. nov., with B6B as the type strain ( = IBRC-M 10775 = KCTC 13828). We also propose that and should be transferred to this new genus and be named comb. nov. and comb. nov., respectively. The type strain of comb. nov. is BH30097 ( = KCTC 3823 = IBRC-M 10657 = JCM 12387) and the type strain of comb. nov. is YIM 93624 ( = DSM 23711 = IBRC-M 10798 = JCM 17364).

Funding
This study was supported by the:
  • Research Council, University of Tehran and Iranian Biological Resource Centre (IBRC) (Award MI-1388-04)
  • International Foundation for Science (IFS) (Award A/4527-1)
  • Spanish Ministerio de Economía y Competitividad (Award CGL2013-46941-P)
  • Junta de Andalucía (Award P10-CVI-6226)
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.065375-0
2014-11-01
2024-04-20
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/64/11/3616.html?itemId=/content/journal/ijsem/10.1099/ijs.0.065375-0&mimeType=html&fmt=ahah

References

  1. Amoozegar M. A., Sánchez-Porro C., Rohban R., Hajighasemi M., Ventosa A. ( 2009a ). Piscibacillus halophilus sp. nov., a moderately halophilic bacterium from a hypersaline Iranian lake. . Int J Syst Evol Microbiol 59, 30953099. [View Article] [PubMed]
    [Google Scholar]
  2. Amoozegar M. A., Sánchez-Porro C., Rohban R., Hajighasemi M., Ventosa A. ( 2009b ). Bacillus persepolensis sp. nov., a moderately halophilic bacterium from a hypersaline lake. . Int J Syst Evol Microbiol 59, 23522358. [View Article] [PubMed]
    [Google Scholar]
  3. Amoozegar M. A., Bagheri M., Didari M., Fazeli S. A. S., Schumann P., Sánchez-Porro C., Ventosa A. ( 2013a ). Saliterribacillus persicus gen. nov., sp. nov., a moderately halophilic bacterium isolated from a hypersaline lake. . Int J Syst Evol Microbiol 63, 345351. [View Article] [PubMed]
    [Google Scholar]
  4. Amoozegar M. A., Didari M., Bagheri M., Fazeli S. A. S., Schumann P., Spröer C., Sánchez-Porro C., Ventosa A. ( 2013b ). Bacillus salsus sp. nov., a halophilic bacterium from a hypersaline lake. . Int J Syst Evol Microbiol 63, 33243329. [View Article] [PubMed]
    [Google Scholar]
  5. Amoozegar M. A., Bagheri M., Makhdoumi-Kakhki A., Didari M., Schumann P., Spröer C., Sánchez-Porro C., Ventosa A. ( 2014 ). Oceanobacillus limi sp. nov., a novel moderately halophilic bacterium from a salt lake. . Int J Syst Evol Microbiol 64, 12841289. [View Article] [PubMed]
    [Google Scholar]
  6. Bagheri M., Didari M., Amoozegar M. A., Schumann P., Sánchez-Porro C., Mehrshad M., Ventosa A. ( 2012 ). Bacillus iranensis sp. nov., a moderate halophile from a hypersaline lake. . Int J Syst Evol Microbiol 62, 811816. [View Article] [PubMed]
    [Google Scholar]
  7. Bagheri M., Amoozegar M. A., Schumann P., Didari M., Mehrshad M., Spröer C., Sánchez-Porro C., Ventosa A. ( 2013 ). Ornithinibacillus halophilus sp. nov., a moderately halophilic, Gram-stain-positive, endospore-forming bacterium from a hypersaline lake. . Int J Syst Evol Microbiol 63, 844848. [View Article] [PubMed]
    [Google Scholar]
  8. Baron E. J., Finegold S. M. ( 1990 ). Bailey and Scott’s Diagnostic Microbiology, , 8th edn.. St Louis, MO:: Mosby;.
    [Google Scholar]
  9. Carrasco I. J., Márquez M. C., Xue Y., Ma Y., Cowan D. A., Jones B. E., Grant W. D., Ventosa A. ( 2008 ). Sediminibacillus halophilus gen. nov., sp. nov., a moderately halophilic, Gram-positive bacterium from a hypersaline lake. . Int J Syst Evol Microbiol 58, 19611967. [View Article] [PubMed]
    [Google Scholar]
  10. Cashion P., Holder-Franklin M. A., McCully J., Franklin M. ( 1977 ). A rapid method for the base ratio determination of bacterial DNA. . Anal Biochem 81, 461466. [View Article] [PubMed]
    [Google Scholar]
  11. Chen Y. G., Cui X. L., Zhang Y. Q., Li W. J., Wang Y. X., Xu L. H., Wen M. L., Peng Q., Jiang C. L. ( 2009 ). Paraliobacillus quinghaiensis sp. nov., isolated from salt-lake sediment in China. . Int J Syst Evol Microbiol 59, 2833. [View Article] [PubMed]
    [Google Scholar]
  12. de la Haba R. R., Sánchez-Porro C., Márquez M. C., Ventosa A. ( 2011 ). Taxonomy of halophiles. . In Extremophiles Handbook, pp. 255308. Edited by Horikoshi K. . Tokyo:: Springer;. [View Article]
    [Google Scholar]
  13. De Ley J., Cattoir H., Reynaerts A. ( 1970 ). The quantitative measurement of DNA hybridization from renaturation rates. . Eur J Biochem 12, 133142. [View Article] [PubMed]
    [Google Scholar]
  14. Didari M., Amoozegar M. A., Bagheri M., Schumann P., Spröer C., Sánchez-Porro C., Ventosa A. ( 2012 ). Alteribacillus bidgolensis gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Bacillus persepolensis as Alteribacillus persepolensis comb. nov.. Int J Syst Evol Microbiol 62, 26912697. [View Article] [PubMed]
    [Google Scholar]
  15. Didari M., Amoozegar M. A., Bagheri M., Mehrshad M., Schumann P., Spröer C., Sánchez-Porro C., Ventosa A. ( 2013 ). Bacillus persicus sp. nov., a halophilic bacterium from a hypersaline lake. . Int J Syst Evol Microbiol 63, 12291234. [View Article] [PubMed]
    [Google Scholar]
  16. Echigo A., Minegishi H., Shimane Y., Kamekura M., Usami R. ( 2012 ). Natribacillus halophilus gen. nov., sp. nov., a moderately halophilic and alkalitolerant bacterium isolated from soil. . Int J Syst Evol Microbiol 62, 289294. [View Article] [PubMed]
    [Google Scholar]
  17. Embley T. M., Wait R. ( 1994 ). Structural lipids of Eubacteria . . In Chemical Methods in Prokaryotic Systematics, pp. 121161. Edited by Goodfellow M., O’Donnell A. G. . New York:: Wiley;.
    [Google Scholar]
  18. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368376. [View Article] [PubMed]
    [Google Scholar]
  19. Fitch W. M. ( 1971 ). Toward defining the course of evolution: minimum change for a specific tree topology. . Syst Zool 20, 406416. [View Article]
    [Google Scholar]
  20. Harrigan W. F., McCance M. E. ( 1976 ). Laboratory Methods in Food and Dairy Microbiology. London:: Academic Press;.
    [Google Scholar]
  21. Heyndrickx M., Lebbe L., Kersters K., De Vos P., Forsyth G., Logan N. A. ( 1998 ). Virgibacillus: a new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus . . Int J Syst Bacteriol 48, 99106. [View Article]
    [Google Scholar]
  22. Huss V. A., Festl H., Schleifer K. H. ( 1983 ). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. . Syst Appl Microbiol 4, 184192. [View Article] [PubMed]
    [Google Scholar]
  23. Ishikawa M., Ishizaki S., Yamamoto Y., Yamasato K. ( 2002 ). Paraliobacillus ryukyuensis gen. nov., sp. nov., a new Gram-positive, slightly halophilic, extremely halotolerant, facultative anaerobe isolated from a decomposing marine alga. . J Gen Appl Microbiol 48, 269279. [View Article] [PubMed]
    [Google Scholar]
  24. Kim O.-S., Cho Y.-J., Lee K., Yoon S.-H., Kim M., Na H., Park S.-C., Jeon Y. S., Lee J.-H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716721. [View Article] [PubMed]
    [Google Scholar]
  25. Lee J.-S., Lim J.-M., Lee K. C., Lee J.-C., Park Y.-H., Kim C.-J. ( 2006 ). Virgibacillus koreensis sp. nov., a novel bacterium from a salt field, and transfer of Virgibacillus picturae to the genus Oceanobacillus as Oceanobacillus picturae comb. nov. with emended descriptions. . Int J Syst Evol Microbiol 56, 251257. [View Article] [PubMed]
    [Google Scholar]
  26. Logan N. A., Berge O., Bishop A. H., Busse H.-J., De Vos P., Fritze D., Heyndrickx M., Kämpfer P., Rabinovitch L. & other authors ( 2009 ). Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. . Int J Syst Evol Microbiol 59, 21142121. [View Article] [PubMed]
    [Google Scholar]
  27. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S. & other authors ( 2004 ). arb: a software environment for sequence data. . Nucleic Acids Res 32, 13631371. [View Article] [PubMed]
    [Google Scholar]
  28. Makhdoumi-Kakhki A., Amoozegar M. A., Kazemi B., PaiC L., Ventosa A. ( 2012 ). Prokaryotic diversity in Aran-Bidgol salt lake, the largest hypersaline playa in Iran. . Microbes Environ 27, 8793. [View Article] [PubMed]
    [Google Scholar]
  29. Marmur J. ( 1961 ). A procedure for the isolation of deoxyribonucleic acid from micro-organisms. . J Mol Biol 3, 208218. [View Article]
    [Google Scholar]
  30. Mata J. A., Martínez-Cánovas J., Quesada E., Béjar V. ( 2002 ). A detailed phenotypic characterisation of the type strains of Halomonas species. . Syst Appl Microbiol 25, 360375. [View Article] [PubMed]
    [Google Scholar]
  31. Mehrshad M., Amoozegar M. A., Didari M., Bagheri M., Fazeli S. A. S., Schumann P., Spröer C., Sánchez-Porro C., Ventosa A. ( 2013 ). Bacillus halosaccharovorans sp. nov., a moderately halophilic bacterium from a hypersaline lake. . Int J Syst Evol Microbiol 63, 27762781. [View Article] [PubMed]
    [Google Scholar]
  32. Mesbah M., Premachandran U., Whitman W. B. ( 1989 ). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. . Int J Syst Bacteriol 39, 159167. [View Article]
    [Google Scholar]
  33. Minnikin D. E., Collins M. D., Goodfellow M. ( 1979 ). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. . J Appl Bacteriol 47, 8795. [View Article]
    [Google Scholar]
  34. Monciardini P., Cavaletti L., Schumann P., Rohde M., Donadio S. ( 2003 ). Conexibacter woesei gen. nov., sp. nov., a novel representative of a deep evolutionary line of descent within the class Actinobacteria . . Int J Syst Evol Microbiol 53, 569576. [View Article] [PubMed]
    [Google Scholar]
  35. Murray R. G. E., Doetsch R. N., Robinow C. F. ( 1994 ). Determinative and cytological light microscopy. . In Methods for General and Molecular Bacteriology, pp. 2141. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  36. Quesada E., Ventosa A., Ruiz-Berraquero F., Ramos-Cormenzana A. ( 1984 ). Deleya halophila, a new species of moderately halophilic bacteria. . Int J Syst Bacteriol 34, 287292. [View Article]
    [Google Scholar]
  37. Rhuland L. E., Work E., Denman R. F., Hoare D. S. ( 1955 ). The behaviour of the isomers of α,ϵ-diaminopimelic acid on paper chromatograms. . J Am Chem Soc 77, 48444846. [View Article]
    [Google Scholar]
  38. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406425.[PubMed]
    [Google Scholar]
  39. Sánchez-Porro C., Amoozegar M. A., Rohban R., Hajighasemi M., Ventosa A. ( 2009 ). Thalassobacillus cyri sp. nov., a moderately halophilic Gram-positive bacterium from a hypersaline lake. . Int J Syst Evol Microbiol 59, 25652570. [View Article] [PubMed]
    [Google Scholar]
  40. Sánchez-Porro C., Amoozegar M. A., Fernandez A. B., Babavalian fard H., Ramezani M., Ventosa A. ( 2010 ). Lentibacillus persicus sp. nov., a moderately halophilic species isolated from a saline lake. . Int J Syst Evol Microbiol 60, 14071412. [View Article] [PubMed]
    [Google Scholar]
  41. Smibert R. M., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607654. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  42. Ventosa A., Quesada E., Rodriguez-Valera F., Ruiz-Berraquero F., Ramos-Cormenzana A. ( 1982 ). Numerical taxonomy of moderately halophilic Gram-negative rods. . J Gen Microbiol 128, 19591968.
    [Google Scholar]
  43. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. & other authors ( 1987 ). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37, 463464. [View Article]
    [Google Scholar]
  44. Zhang Y. J., Zhou Y., Ja M., Shi R., Chun-Yu W. X., Yang L. L., Tang S. K., Li W. J. ( 2012 ). Virgibacillus albus sp. nov., a novel moderately halophilic bacterium isolated from Lop Nur salt lake in Xinjiang province, China. . Antonie van Leeuwenhoek 102, 553560. [View Article] [PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.065375-0
Loading
/content/journal/ijsem/10.1099/ijs.0.065375-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error