Description of Domibacillus indicus sp. nov., isolated from ocean sediments and emended description of the genus Domibacillus

References

1. De Ley J., Cattoir H., Reynaerts A. ( 1970 ). The quantitative measurement of DNA hybridization from renaturation rates. . Eur J Biochem 12, 133–142. [View Article] [PubMed]
   [Google Scholar]
2. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368–376. [View Article] [PubMed]
   [Google Scholar]
3. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783–791. [View Article]
   [Google Scholar]
4. Gillis M., De Ley J., De Cleene M. ( 1970 ). The determination of molecular weight of bacterial genome DNA from renaturation rates. . Eur J Biochem 12, 143–153. [View Article] [PubMed]
   [Google Scholar]
5. Gonzalez J. M., Saiz-Jimenez C. ( 2002 ). A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. . Environ Microbiol 4, 770–773. [View Article] [PubMed]
   [Google Scholar]
6. Huss V. A. R., Festl H., Schleifer K. H. ( 1983 ). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. . Syst Appl Microbiol 4, 184–192. [View Article] [PubMed]
   [Google Scholar]
7. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716–721. [View Article] [PubMed]
   [Google Scholar]
8. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111–120. [View Article] [PubMed]
   [Google Scholar]
9. Lane D. J. ( 1991 ). 16S/23S rRNA sequencing. . In Nucleic Acids Techniques in Bacterial Systematics, pp. 115–147. Edited by Stackebrandt E., Goodfellow M. . Chichester:: Wiley;.
   [Google Scholar]
10. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. & other authors ( 2007 ). clustal w and clustal_x version 2.0. . Bioinformatics 23, 2947–2948. [View Article] [PubMed]
    [Google Scholar]
11. Loveland-Curtze J., Miteva V. I., Brenchley J. E. ( 2011 ). Evaluation of a new fluorimetric DNA–DNA hybridization method. . Can J Microbiol 57, 250–255. [View Article] [PubMed]
    [Google Scholar]
12. Marmur J. ( 1961 ). A procedure for isolation of deoxyribonucleic acid from micro-organisms. . J Mol Biol 3, 208–218. [View Article]
    [Google Scholar]
13. Nei M., Kumar S. ( 2000 ). Molecular Evolution and Phylogenetics. New York:: Oxford University Press;.
    [Google Scholar]
14. Parte A. C. ( 2014 ). LPSN–list of prokaryotic names with standing in nomenclature. . Nucleic Acids Res 42 (Database issue), D613–D616. [View Article] [PubMed]
    [Google Scholar]
15. Prakash O., Green S. J., Jasrotia P., Overholt W. A., Canion A., Watson D. B., Brooks S. C., Kostka J. E. ( 2012 ). Rhodanobacter denitrificans sp. nov., isolated from nitrate-rich zones of a contaminated aquifer. . Int J Syst Evol Microbiol 62, 2457–2462. [View Article] [PubMed]
    [Google Scholar]
16. Prakash O., Munot H., Nimonkar Y., Sharma M., Kumbhare S., Shouche Y. S. ( 2014 ). Description of Pelistega indica sp. nov., isolated from human gut. . Int J Syst Evol Microbiol 64, 1389–1394. [View Article] [PubMed]
    [Google Scholar]
17. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
18. Schumann P. ( 2011 ). Peptidoglycan structure. . In Taxonomy of Prokaryotes, Methods in Microbiology, vol. 38, pp. 101–129. Edited by Rainey F., Oren A. . London:: Academic Press;. [View Article]
    [Google Scholar]
19. Seiler H., Wenning M., Scherer S. ( 2013 ). Domibacillus robiginosus gen. nov., sp. nov., isolated from a pharmaceutical clean room. . Int J Syst Evol Microbiol 63, 2054–2061. [View Article] [PubMed]
    [Google Scholar]
20. Smibert R. M., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607–654. Edited by Gerhardt P. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
21. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 2731–2739. [View Article] [PubMed]
    [Google Scholar]
22. Tindall B. J. ( 1990a ). Lipid composition of Halobacterium lacusprofundi . . FEMS Microbiol Lett 66, 199–202. [View Article]
    [Google Scholar]
23. Tindall B. J. ( 1990b ). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. . Syst Appl Microbiol 13, 128–130. [View Article]
    [Google Scholar]
24. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. & other authors ( 1987 ). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37, 463–464. [View Article]
    [Google Scholar]