Pantoea coffeiphila sp. nov., cause of the ‘potato taste’ of Arabica coffee from the African Great Lakes region

References

1. Becker R., Döhla B., Nitz S., Vitzthum O. G. ( 1988 ). Identification of the ‘peasy’ off-flavour note in Central African coffees. . In XII^e Collooque Scientifique International sur le Café, Montreux, Suisse, 29 Juin–3 Juillet 1987 . , pp 203–215. Paris:: ASIC;.
2. Bouvet O. M. M., Lenormand P., Grimont P. A. D. ( 1989 ). Taxonomic diversity of the d-glucose oxidation pathway in the Enterobacteriaceae . . Int J Syst Bacteriol 39, 61–67. [CrossRef]
   [Google Scholar]
3. Bouyjou B., Decazy B., Fourny G. ( 1999 ). L’élimination du ‘goût de pomme de terre’ dans le café Arabica du Burundi. . Plantations recherche développement 6,107–112.
   [Google Scholar]
4. Brady C., Cleenwerck I., Venter S., Vancanneyt M., Swings J., Coutinho T. ( 2008 ). Phylogeny and identification of Pantoea species associated with plants, humans and the natural environment based on multilocus sequence analysis (MLSA). . Syst Appl Microbiol 31, 447–460. [CrossRef] [PubMed]
   [Google Scholar]
5. Brady C. L., Venter S. N., Cleenwerck I., Engelbeen K., Vancanneyt M., Swings J., Coutinho T. A. ( 2009 ). Pantoea vagans sp. nov., Pantoea eucalypti sp. nov., Pantoea deleyi sp. nov. and Pantoea anthophila sp. nov.. Int J Syst Evol Microbiol 59, 2339–2345. [CrossRef] [PubMed]
   [Google Scholar]
6. Brady C. L., Venter S. N., Cleenwerck I., Vandemeulebroecke K., De Vos P., Coutinho T. A. ( 2010a ). Transfer of Pantoea citrea, Pantoea punctata and Pantoea terrea to the genus Tatumella emend. as Tatumella citrea comb. nov., Tatumella punctata comb. nov. and Tatumella terrea comb. nov. and description of Tatumella morbirosei sp. nov.. Int J Syst Evol Microbiol 60, 484–494. [CrossRef] [PubMed]
   [Google Scholar]
7. Brady C. L., Cleenwerck I., Venter S. N., Engelbeen K., De Vos P., Coutinho T. A. ( 2010b ). Emended description of the genus Pantoea, description of four species from human clinical samples, Pantoea septica sp. nov., Pantoea eucrina sp. nov., Pantoea brenneri sp. nov. and Pantoea conspicua sp. nov., and transfer of Pectobacterium cypripedii (Hori 1911) Brenner et al. 1973 emend. Hauben et al. 1998 to the genus as Pantoea cypripedii comb. nov. . Int J Syst Evol Microbiol 60, 2430–2440. [CrossRef] [PubMed]
   [Google Scholar]
8. Brady C. L., Goszczynska T., Venter S. N., Cleenwerck I., De Vos P., Gitaitis R. D., Coutinho T. A. ( 2011 ). Pantoea allii sp. nov., isolated from onion plants and seed. . Int J Syst Evol Microbiol 61, 932–937. [CrossRef] [PubMed]
   [Google Scholar]
9. Brady C. L., Cleenwerck I., van der Westhuizen L., Venter S. N., Coutinho T. A., De Vos P. ( 2012 ). Pantoea rodasii sp. nov., Pantoea rwandensis sp. nov. and Pantoea wallisii sp. nov., isolated from Eucalyptus . . Int J Syst Evol Microbiol 62, 1457–1464. [CrossRef] [PubMed]
   [Google Scholar]
10. Brenner D. J., McWhorter A. C., Knutson J. K., Steigerwalt A. G. ( 1982 ). Escherichia vulneris: a new species of Enterobacteriaceae associated with human wounds. . J Clin Microbiol 15, 1133–1140.[PubMed]
    [Google Scholar]
11. Brenner D. J., Fanning G. R., Leete Knutson J. K., Steigerwalt A. G., Krichevsky M. I. ( 1984 ). Attempts to classify Herbicola group-Enterobacter agglomerans strains by deoxyribonucleic acid hybridization and phenotypic tests. . Int J Syst Bacteriol 34, 45–55. [CrossRef]
    [Google Scholar]
12. Brosius J., Palmer M., Kennedy P. J., Noller H. F. ( 1978 ). Complete nucleotide sequence of a 16S ribosomal RNA gene from E. coli . . Proc Natl Acad Sci USA 75, 4801–4805. [CrossRef] [PubMed]
    [Google Scholar]
13. Cheng T.-B., Reineccius G. A., Bjorklund J. A., Leete E. ( 1991 ). Biosynthesis of 2-methoxy-3-isopropylpyrazine in Pseudomonas perolens . . J Agric Food Chem 39, 1009–1012. [CrossRef]
    [Google Scholar]
14. Crosa J. H., Brenner D. J., Falkow S. ( 1973 ). Use of a single-strand specific nuclease for analysis of bacterial and plasmid deoxyribonucleic acid homo- and heteroduplexes. . J Bacteriol 115, 904–911.[PubMed]
    [Google Scholar]
15. Czerny M., Grosch W. ( 2000 ). Potent odorants of raw Arabica coffee. Their changes during roasting. . J Agric Food Chem 48, 868–872. [CrossRef] [PubMed]
    [Google Scholar]
16. Franca A. S., Oliveira L. S., Mendonça J. C. F., Silva X. A. ( 2005 ). Physical and chemical attributes of defective crude and roasted coffee beans. . Food Chem 90, 89–94. [CrossRef]
    [Google Scholar]
17. Gallois A., Grimont P. A. D. ( 1985 ). Pyrazines responsible for the potatolike odor produced by some Serratia and Cedecea strains. . Appl Environ Microbiol 50, 1048–1051.
    [Google Scholar]
18. Grimont P. A. D., Grimont F. ( 2005 ). Genus XXIII. Pantoea Gavini, Mergaert, Beji, Mielcarek, Izard, Kersters and De Ley 1989b, 343^VP emend. Mergaert, Verdonck and Kersters 1993, 171. . In Bergey’s Manual of Systematic Bacteriololgy , , 2nd edn., vol. 2, Part B, pp. 713–720. Edited by Brenner D. J., Krieg N. R., Staley J. T., Garrity G. M. . New York:: Springer;.
    [Google Scholar]
19. Grimont P. A. D., Popoff M. Y., Grimont F., Coynault C., Lemelin M. ( 1980 ). Reproducibility and correlation study of three deoxyribonucleic acid hybridization procedures. . Curr Microbiol 4, 325–330. [CrossRef]
    [Google Scholar]
20. Grimont P. A. D., Jackson T. A., Ageron E., Noonan M. J. ( 1988 ). Serratia entomophila sp. nov. associated with amber disease in the New Zealand grass grub Costelytra zealandica . . Int J Syst Bacteriol 38, 1–6. [CrossRef]
    [Google Scholar]
21. Higgins D. G., Sharp P. M. ( 1988 ). clustal: a package for performing multiple sequence alignment on a microcomputer. . Gene 73, 237–244. [CrossRef] [PubMed]
    [Google Scholar]
22. Janvier M., Grimont P. A. D. ( 1995 ). The genus Methylophaga, a new line of descent within phylogenetic branch γ of Proteobacteria. . Res Microbiol 146, 543–550. [CrossRef] [PubMed]
    [Google Scholar]
23. Mergaert J., Verdonck L., Kersters K. ( 1993 ). Transfer of Erwinia ananas (synonym, Erwinia uredovora) and Erwinia stewartii to the genus Pantoea emend. as Pantoea ananas (Serrano 1928) comb. nov. and Pantoea stewartii (Smith 1898) comb. nov., respectively, and description of Pantoea stewartii subsp. indologenes subsp. nov.. Int J Syst Bacteriol 43, 162–173. [CrossRef]
    [Google Scholar]
24. Popp A., Cleenwerck I., Iversen C., De Vos P., Stephan R. ( 2010 ). Pantoea gaviniae sp. nov. and Pantoea calida sp. nov., isolated from infant formula and an infant formula production environment. . Int J Syst Evol Microbiol 60, 2786–2792. [CrossRef] [PubMed]
    [Google Scholar]
25. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
26. Seo T.-K. ( 2008 ). Calculating bootstrap probabilities of phylogeny using multilocus sequence data. . Mol Biol Evol 25, 960–971. [CrossRef] [PubMed]
    [Google Scholar]
27. Stolp H. ( 1960 ). Über das Zusammenwirken von Bakterien und Insekten bei der Entstehung einer Geschmacksbeeinträchtigung des Kivu-Kaffees und die Rolle von Bakteriophagen bei der Aufklärung der Zusammenhänge. . Phytopathol Zeitschrift 39, 1–15.
    [Google Scholar]
28. Tayeb L. A., Lefevre M., Passet V., Diancourt L., Brisse S., Grimont P. A. D. ( 2008 ). Comparative phylogenies of Burkholderia, Ralstonia, Comamonas, Brevundimonas and related organisms derived from rpoB, gyrB and rrs gene sequences. . Res Microbiol 159, 169–177. [CrossRef] [PubMed]
    [Google Scholar]
29. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. et al. ( 1987 ). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37, 463–464. [CrossRef]
    [Google Scholar]