Liberibacter crescens gen. nov., sp. nov., the first cultured member of the genus Liberibacter

References

1. Alsmark C. M., Frank A. C., Karlberg E. O., Legault B. A., Ardell D. H., Canbäck B., Eriksson A. S., Näslund A. K., Handley S. A. & other authors ( 2004 ). The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae . . Proc Natl Acad Sci U S A 101, 9716–9721. [View Article] [PubMed]
   [Google Scholar]
2. Anisimova M., Gascuel O. ( 2006 ). Approximate likelihood-ratio test for branches: a fast, accurate, and powerful alternative. . Syst Biol 55, 539–552. [View Article] [PubMed]
   [Google Scholar]
3. Brown P. J. B., de Pedro M. A., Kysela D. T., Van der Henst C., Kim J., De Bolle X., Fuqua C., Brun Y. V. ( 2012 ). Polar growth in the Alphaproteobacterial order Rhizobiales . . Proc Natl Acad Sci U S A 109, 1697–1701. [View Article] [PubMed]
   [Google Scholar]
4. Capoor S. P., Rao D. G., Viswanath S. M. ( 1967 ). Diaphorina citri kuway, a vector of greening disease of citrus in India. . Indian J Agric Sci 37, 572–577.
   [Google Scholar]
5. Castresana J. ( 2000 ). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. . Mol Biol Evol 17, 540–552. [View Article] [PubMed]
   [Google Scholar]
6. Chenoweth M. R., Somerville G. A., Krause D. C., O’Reilly K. L., Gherardini F. C. ( 2004 ). Growth characteristics of Bartonella henselae in a novel liquid medium: primary isolation, growth-phase-dependent phage induction, and metabolic studies. . Appl Environ Microbiol 70, 656–663. [View Article] [PubMed]
   [Google Scholar]
7. Chevenet F., Brun C., Bañuls A. L., Jacq B., Christen R. ( 2006 ). TreeDyn: towards dynamic graphics and annotations for analyses of trees. . BMC Bioinformatics 7, 439. [View Article] [PubMed]
   [Google Scholar]
8. Davis M. J., Mondal S. N., Chen H., Rogers M. E., Brlansky R. H. ( 2008 ). Co-cultivation of ‘Candidatus Liberibacter asiaticus’ with Actinobacteria from citrus with Huanglongbing. . Plant Dis 92, 1547–1550. [View Article]
   [Google Scholar]
9. Dereeper A., Guignon V., Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J. F., Guindon S., Lefort V. & other authors ( 2008 ). Phylogeny.fr: robust phylogenetic analysis for the non-specialist. . Nucleic Acids Res 36 (Web Server), W465–W469. [View Article] [PubMed]
   [Google Scholar]
10. Edgar R. C. ( 2004 ). muscle: multiple sequence alignment with high accuracy and high throughput. . Nucleic Acids Res 32, 1792–1797. [View Article] [PubMed]
    [Google Scholar]
11. Fagen J. R., Leonard M. T., McCullough C. M., Edirisinghe J. N., Henry C. S., Davis M. J., Triplett E. W. ( 2014 ). Comparative genomics of cultured and uncultured strains suggests genes essential for free-living growth of Liberibacter . . PLoS ONE 9, e84469. [View Article] [PubMed]
    [Google Scholar]
12. Galibert F., Finan T. M., Long S. R., Puhler A., Abola P., Ampe F., Barloy-Hubler F., Barnett M. J., Becker A. & other authors ( 2001 ). The composite genome of the legume symbiont Sinorhizobium meliloti . . Science 293, 668–672. [View Article] [PubMed]
    [Google Scholar]
13. Guindon S., Gascuel O. ( 2003 ). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. . Syst Biol 52, 696–704. [View Article] [PubMed]
    [Google Scholar]
14. Hansen A. K., Trumble J. T., Stouthamer R., Paine T. D. ( 2008 ). A new Huanglongbing Species, “Candidatus Liberibacter psyllaurous,” found to infect tomato and potato, is vectored by the psyllid Bactericera cockerelli (Sulc). . Appl Environ Microbiol 74, 5862–5865. [View Article] [PubMed]
    [Google Scholar]
15. Hertig M. ( 1936 ). The rickettsia, Wolbachia pipientis (genet sp. n.) and associated inclusions of the mosquito Culex pipiens . . Parasitology 28, 453–486. [View Article]
    [Google Scholar]
16. Jagoueix S., Bove J. M., Garnier M. ( 1994 ). The phloem-limited bacterium of greening disease of citrus is a member of the α subdivision of the Proteobacteria . . Int J Syst Bacteriol 44, 379–386. [View Article] [PubMed]
    [Google Scholar]
17. Jarvis B. D. W., Tighe S. W. ( 1994 ). Rapid identification of Rhizobium species based on cellular fatty acid analysis. . Plant Soil 161, 31–41. [View Article]
    [Google Scholar]
18. Kapur S. P., Kapoor S. K., Cheema S. S., Dhillon R. S. ( 1978 ). Effect of greening disease on tree and fruit characters of Kinnow mandarin. . Punjab Hort J 50, 76–79.
    [Google Scholar]
19. Leonard M. T., Fagen J. R., Davis-Richardson A. G., Davis M. J., Triplett E. W. ( 2012 ). Complete genome sequence of Liberibacter crescens BT-1. . Stand Genomic Sci 7, 271–283. [View Article] [PubMed]
    [Google Scholar]
20. Liefting L. W., Weir B. S., Pennycook S. R., Clover G. R. G. ( 2009 ). ‘Candidatus Liberibacter solanacearum’, associated with plants in the family Solanaceae. . Int J Syst Evol Microbiol 59, 2274–2276. [View Article] [PubMed]
    [Google Scholar]
21. Murray R. G. E., Stackebrandt E. ( 1995 ). Taxonomic note: implementation of the provisional status Candidatus for incompletely described procaryotes. . Int J Syst Bacteriol 45, 186–187. [View Article] [PubMed]
    [Google Scholar]
22. Pelz-Stelinski K. S., Brlansky R. H., Ebert T. A., Rogers M. E. ( 2010 ). Transmission parameters for Candidatus liberibacter asiaticus by Asian citrus psyllid (Hemiptera: Psyllidae). . J Econ Entomol 103, 1531–1541. [View Article] [PubMed]
    [Google Scholar]
23. Pérez K. A., Piñol B., Rosete Y. A., Wilson M., Boa E., Lucas J. ( 2010 ). Transmission of the phytoplasma associated with bunchy top symptom of papaya by Empoasca papaya Oman. . J Phytopathol 158, 194–196. [View Article]
    [Google Scholar]
24. Raddadi N., Gonella E., Camerota C., Pizzinat A., Tedeschi R., Crotti E., Mandrioli M., Bianco P. A., Daffonchio D., Alma A. ( 2011 ). ‘Candidatus Liberibacter europaeus’ sp. nov. that is associated with and transmitted by the psyllid Cacopsylla pyri apparently behaves as an endophyte rather than a pathogen. . Environ Microbiol 13, 414–426. [View Article] [PubMed]
    [Google Scholar]
25. Richter M., Rosselló-Móra R. ( 2009 ). Shifting the genomic gold standard for the prokaryotic species definition. . Proc Natl Acad Sci U S A 106, 19126–19131. [View Article] [PubMed]
    [Google Scholar]
26. Segovia L., Young J. P. W., Martínez-Romero E. ( 1993 ). Reclassification of American Rhizobium leguminosarum biovar phaseoli type I strains as Rhizobium etli sp. nov.. Int J Syst Bacteriol 43, 374–377. [View Article] [PubMed]
    [Google Scholar]
27. Shokrollah H., Abdullah T. L., Sijam K., Abdullah S. N. A. ( 2010 ). Ultrastructure of Candidatus Liberibacter asiaticus and its damage in Huanglongbing (HLB) infected citrus. . African J Biotechnol 9, 5897–5901.
    [Google Scholar]
28. Stamatakis A. ( 2006 ). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. . Bioinformatics 22, 2688–2690. [View Article] [PubMed]
    [Google Scholar]
29. Teixeira D. C., Saillard C., Eveillard S., Danet J. L., da Costa P. I., Ayres A. J., Bové J. ( 2005 ). ‘Candidatus Liberibacter americanus’, associated with citrus huanglongbing (greening disease) in São Paulo State, Brazil. . Int J Syst Evol Microbiol 55, 1857–1862. [View Article] [PubMed]
    [Google Scholar]
30. Welch D. F., Pickett D. A., Slater L. N., Steigerwalt A. G., Brenner D. J. ( 1992 ). Rochalimaea henselae sp. nov., a cause of septicemia, bacillary angiomatosis, and parenchymal bacillary peliosis. . J Clin Microbiol 30, 275–280.[PubMed]
    [Google Scholar]
31. Werren J. H. ( 1997 ). Biology of Wolbachia . . Annu Rev Entomol 42, 587–609. [View Article] [PubMed]
    [Google Scholar]
32. Zhang S., Flores-Cruz Z., Zhou L., Kang B.-H., Fleites L. A., Gooch M. D., Wulff N. A., Davis M. J., Duan Y.-P., Gabriel D. W. ( 2011 ). ‘Ca. Liberibacter asiaticus’ carries an excision plasmid prophage and a chromosomally integrated prophage that becomes lytic in plant infections. . Mol Plant Microbe Interact 24, 458–468. [View Article] [PubMed]
    [Google Scholar]