Hoppeia youngheungensis gen. nov., sp. nov., a member of the Flavobacteriaceae isolated from tidal flat sediment, and emended descriptions of the genus Sediminibacter and Sediminibacter furfurosus

References

1. Bernardet J.-F., Nakagawa Y. ( 2006 ). An introduction to the family Flavobacteriaceae . . In The Prokaryotes, a Handbook on the Biology of Bacteria, , 3rd edn., vol. 7, pp. 455–480. Edited by Dworkin M., Falkow S., Rosenberg E., Schleifer K. H., Stackebrandt E. . New York:: Springer;.
   [Google Scholar]
2. Bernardet J.-F., Segers P., Vancanneyt M., Berthe F., Kersters K., Vandamme P. ( 1996 ). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl and Tait 1978). . Int J Syst Bacteriol 46, 128–148. [View Article]
   [Google Scholar]
3. Bernardet J.-F., Nakagawa Y., Holmes B. Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes ( 2002 ). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. . Int J Syst Evol Microbiol 52, 1049–1070. [View Article] [PubMed]
   [Google Scholar]
4. Bowman J. P. ( 2000 ). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov.. Int J Syst Evol Microbiol 50, 1861–1868.[PubMed]
   [Google Scholar]
5. Bowman J. P., Nichols D. S. ( 2005 ). Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia . . Int J Syst Evol Microbiol 55, 1471–1486. [View Article] [PubMed]
   [Google Scholar]
6. Bowman J. P., McCammon S. A., Brown J. L., Nichols P. D., McMeekin T. A. ( 1997 ). Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from Antarctic lacustrine and sea ice habitats. . Int J Syst Bacteriol 47, 670–677. [View Article] [PubMed]
   [Google Scholar]
7. Collins M. D. ( 1985 ). Isoprenoid quinone analysis in bacterial classification and identification. . In Chemical Methods in Bacterial Systematics, pp. 267–287. Edited by Goodfellow M., Minnikin D. E. . London:: Academic Press;.
   [Google Scholar]
8. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368–376. [View Article] [PubMed]
   [Google Scholar]
9. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783–791. [View Article]
   [Google Scholar]
10. Fitch W. M. ( 1971 ). Toward defining the course of evolution: minimum change for a specific tree topology. . Syst Zool 20, 406–416. [View Article]
    [Google Scholar]
11. Garrity G. M., Holt J. G. ( 2001 ). The road map to the Manual . . In Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 1, pp. 119–166. Edited by Boone D. R., Castenholz R. W., Garrity G. M. . New York:: Springer;. [View Article]
    [Google Scholar]
12. Jooste P. J. ( 1985 ). The taxonomy and significance of Flavobacterium–Cytophaga strains from dairy sources. PhD thesis, University of the Orange Free State;, Bloemfontein, South Africa:.
    [Google Scholar]
13. Khan S. T., Nakagawa Y., Harayama S. ( 2007 ). Sediminibacter furfurosus gen. nov., sp. nov. and Gilvibacter sediminis gen. nov., sp. nov., novel members of the family Flavobacteriaceae . . Int J Syst Evol Microbiol 57, 265–269. [View Article] [PubMed]
    [Google Scholar]
14. Kim O.-S., Cho Y.-J., Lee K., Yoon S.-H., Kim M., Na H., Park S.-C., Jeon Y. S., Lee J.-H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716–721. [View Article] [PubMed]
    [Google Scholar]
15. Kirchman D. L. ( 2002 ). The ecology of Cytophaga–Flavobacteria in aquatic environments. . FEMS Microbiol Ecol 39, 91–100.[PubMed]
    [Google Scholar]
16. Kwon K. K., Lee H. S., Yang S.-H., Kim S.-J. ( 2005 ). Kordiimonas gwangyangensis gen. nov., sp. nov., a marine bacterium isolated from marine sediments that forms a distinct phyletic lineage (Kordiimonadales ord. nov.) in the ‘Alphaproteobacteria’. . Int J Syst Evol Microbiol 55, 2033–2037. [View Article] [PubMed]
    [Google Scholar]
17. Kwon K. K., Lee H. S., Jung H. B., Kang J. H., Kim S. J. ( 2006 ). Yeosuana aromativorans gen. nov., sp. nov., a mesophilic marine bacterium belonging to the family Flavobacteriaceae, isolated from estuarine sediment of the South Sea, Korea. . Int J Syst Evol Microbiol 56, 727–732. [View Article] [PubMed]
    [Google Scholar]
18. Kwon Y. M., Yang S.-H., Kwon K. K., Kim S.-J. ( 2014 ). Nonlabens antarcticus sp. nov., a psychrophilic bacterium isolated from glacier ice, and emended descriptions of Nonlabens marinus Park et al. 2012 and Nonlabens agnitus Yi and Chun 2012. . Int J Syst Evol Microbiol 64, 400–405. [View Article] [PubMed]
    [Google Scholar]
19. Macián M. C., Pujalte M. J., Márquez M. C., Ludwig W., Ventosa A., Garay E., Schleifer K. H. ( 2002 ). Gelidibacter mesophilus sp. nov., a novel marine bacterium in the family Flavobacteriaceae . . Int J Syst Evol Microbiol 52, 1325–1329. [View Article] [PubMed]
    [Google Scholar]
20. O’Sullivan L. A., Weightman A. J., Fry J. C. ( 2002 ). New degenerate Cytophaga–Flexibacter–Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taff epilithon. . Appl Environ Microbiol 68, 201–210. [View Article] [PubMed]
    [Google Scholar]
21. Reichenbach H. ( 1992 ). The order Cytophagales . . In The Prokaryotes, pp. 3631–3675. Edited by Balows A., Trüper H. G., Dworkin M., Harder W., Schleifer K. H. . New York:: Springer;. [View Article]
    [Google Scholar]
22. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
23. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. . Newark, DE:: MIDI Inc;.
    [Google Scholar]
24. Seo H.-S., Kwon K. K., Yang S.-H., Lee H.-S., Bae S. S., Lee J.-H., Kim S.-J. ( 2009 ). Marinoscillum gen. nov., a member of the family ‘Flexibacteraceae’, with Marinoscillum pacificum sp. nov. from a marine sponge and Marinoscillum furvescens nom. rev., comb. nov.. Int J Syst Evol Microbiol 59, 1204–1208. [View Article] [PubMed]
    [Google Scholar]
25. Smibert R. M., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607–654. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
26. Stackebrandt E., Liesack W. ( 1993 ). Nucleic acids and classification. . In Handbook of New Bacterial Systematics, pp. 158–160. Edited by Goodfellow M., O’Donnell A. G. . London:: Academic Press;.
    [Google Scholar]
27. Tindall B. J., Rosselló-Móra R., Busse H.-J., Ludwig W., Kämpfer P. ( 2010 ). Notes on the characterization of prokaryote strains for taxonomic purposes. . Int J Syst Evol Microbiol 60, 249–266. [View Article] [PubMed]
    [Google Scholar]
28. Wang B., Sun F., Du Y., Liu X., Li G., Lai Q., Luo J., Shao Z. ( 2010 ). Meridianimaribacter flavus gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from marine sediment of the South China Sea. . Int J Syst Evol Microbiol 60, 121–127. [View Article] [PubMed]
    [Google Scholar]
29. Weeks O. B. ( 1981 ). Preliminary studies of the pigments of Flavobacterium breve NCTC 11099 and Flavobacterium odoratum NCTC 11036. . In The Flavobacterium–Cytophaga Group, pp. 108–114. Edited by Weeks O. B. . Weinheim:: Gesellschaft für Biotechnologische Forschung;.
    [Google Scholar]
30. Yang S.-H., Kwon K. K., Lee H.-S., Kim S.-J. ( 2006 ). Shewanella spongiae sp. nov., isolated from a marine sponge. . Int J Syst Evol Microbiol 56, 2879–2882. [View Article] [PubMed]
    [Google Scholar]
31. Yang S.-J., Oh H.-M., Chung S., Cho J.-C. ( 2009 ). Antarcticimonas flava gen. nov., sp. nov., isolated from Antarctic coastal seawater. . J Microbiol 47, 517–523. [View Article] [PubMed]
    [Google Scholar]
32. Yi H., Chun J. ( 2011 ). Snuella lapsa gen. nov., sp. nov., isolated from tidal flat sediment. . Int J Syst Evol Microbiol 61, 2469–2474. [View Article] [PubMed]
    [Google Scholar]
33. Yi H., Chun J. ( 2012 ). Unification of the genera Nonlabens, Persicivirga, Sandarakinotalea and Stenothermobacter into a single emended genus, Nonlabens, and description of Nonlabens agnitus sp. nov.. Syst Appl Microbiol 35, 150–155. [View Article] [PubMed]
    [Google Scholar]
34. Yoshizawa S., Kawanabe A., Ito H., Kandori H., Kogure K. ( 2012 ). Diversity and functional analysis of proteorhodopsin in marine Flavobacteria . . Environ Microbiol 14, 1240–1248. [View Article] [PubMed]
    [Google Scholar]
35. ZoBell C. E. ( 1946 ). Marine Microbiology. Waltham, MA:: Chronica Botanica;.
    [Google Scholar]