1887

Abstract

A pink, Gram-stain-negative, motile, halotolerant bacterium with subpolar flagellum, designated strain BH87090, was isolated from a saline soil sample collected from the south-west coastal area of South Korea (125° 58′ 58.08″ E 34° 45′ 37.32″ N). The isolate formed opaque pink to red colonies on marine agar plates at 30 °C. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, sulfoquinovosyl diacylglycerol, phosphatidylcholine and one unidentified phospholipid. The sole respiratory quinone was ubiquinone-10 (Q-10). The major cellular fatty acids were Cω7, C cyclo ω8, C and 11-methyl Cω7. The genomic DNA G+C content was 61.8 mol%. These chemotaxonomic characteristics were all consistent with specific properties of the genus . Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolate affiliated to the cluster with members of the genus in the clade, which suggested that the strain belonged to the genus . However, the low 16S rRNA gene similarities (93.5–95.3 %) of strain BH87090 with all the members of the genus indicated that it represented a novel species of the genus . On the basis of phenotypic and genotypic data, strain BH87090 should be classified as a novel species of the genus . The name sp. nov. is proposed, with strain BH87090 ( = DSM 23042 = KCTC 22650) as the type strain.

Funding
This study was supported by the:
  • Procurement and development of foreign biological resources’ (NRF) funded by the Ministry of Science, ICT and Future Planning of the Korean government,
  • KRIBB Research Initiative Program
  • National Natural Science Foundation of China (Award NSFC 81173026)
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2014-05-01
2024-04-25
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References

  1. Chen M.-H., Sheu S.-Y., Chen C. A., Wang J.-T., Chen W.-M. ( 2012 ). Roseivivax isoporae sp. nov., isolated from a reef-building coral, and emended description of the genus Roseivivax . . Int J Syst Evol Microbiol 62, 12591264. [View Article] [PubMed]
    [Google Scholar]
  2. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368376. [View Article] [PubMed]
    [Google Scholar]
  3. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783791. [View Article]
    [Google Scholar]
  4. Kim O. S., Cho Y.-J., Lee K., Yoon S.-H., Kim M., Na H., Park S.-C., Jeon Y. S., Lee J.-H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716721. [View Article] [PubMed]
    [Google Scholar]
  5. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111120. [View Article] [PubMed]
    [Google Scholar]
  6. Kimura M. ( 1983 ). The Neutral Theory of Molecular Evolution. Cambridge:: Cambridge University Press;. [View Article]
    [Google Scholar]
  7. Kluge A. G., Farris J. S. ( 1969 ). Quantitative phyletics and the evolution of anurans. . Syst Zool 18, 132. [View Article]
    [Google Scholar]
  8. Kroppenstedt R. M. ( 1985 ). Fatty acid and menaquinone analysis of actinomycetes and related organisms. . In Chemical Methods in Bacterial Systematics, pp. 173199. Edited by Goodfellow M., Minnikin D. E. . London:: Academic Press;.
    [Google Scholar]
  9. Kumar S., Nei M., Dudley J., Tamura K. ( 2008 ). mega: a biologist-centric software for evolutionary analysis of DNA and protein sequences. . Brief Bioinform 9, 299306. [View Article] [PubMed]
    [Google Scholar]
  10. Lee J. S., Shin Y. K., Yoon J. H., Takeuchi M., Pyun Y. R., Park Y. H. ( 2001 ). Sphingomonas aquatilis sp. nov., Sphingomonas koreensis sp. nov., and Sphingomonas taejonensis sp. nov., yellow-pigmented bacteria isolated from natural mineral water. . Int J Syst Evol Microbiol 51, 14911498.[PubMed]
    [Google Scholar]
  11. Li W. J., Xu P., Schumann P., Zhang Y. Q., Pukall R., Xu L. H., Stackebrandt E., Jiang C. L. ( 2007 ). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia . . Int J Syst Evol Microbiol 57, 14241428. [View Article] [PubMed]
    [Google Scholar]
  12. Meier A., Kirschner P., Schröder K. H., Wolters J., Kroppenstedt R. M., Böttger E. C. ( 1993 ). Mycobacterium intermedium sp. nov.. Int J Syst Bacteriol 43, 204209. [View Article] [PubMed]
    [Google Scholar]
  13. Mesbah M., Premachandran U., Whitman W. B. ( 1989 ). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. . Int J Syst Bacteriol 39, 159167. [View Article]
    [Google Scholar]
  14. Minnikin D. E., O'Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H. ( 1984 ). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. . J Microbiol Methods 2, 233241. [CrossRef]
    [Google Scholar]
  15. Park S., Kang S.-J., Oh T.-K., Yoon J.-H. ( 2010 ). Roseivivax lentus sp. nov., isolated from a tidal flat sediment, and emended description of the genus Roseivivax Suzuki et al. 1999. . Int J Syst Evol Microbiol 60, 11131117. [View Article] [PubMed]
    [Google Scholar]
  16. Reddy G. S., Nagy M., Garcia-Pichel F. ( 2006 ). Belnapia moabensis gen. nov., sp. nov., an alphaproteobacterium from biological soil crusts in the Colorado Plateau, USA. . Int J Syst Evol Microbiol 56, 5158. [View Article] [PubMed]
    [Google Scholar]
  17. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406425.[PubMed]
    [Google Scholar]
  18. Smibert R. M., Krieg N. L. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607654. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  19. Stackebrandt E., Goebel B. M. ( 1994 ). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. . Int J Syst Bacteriol 44, 846849. [View Article]
    [Google Scholar]
  20. Suzuki T., Muroga Y., Takahama M., Nishimura Y. ( 1999 ). Roseivivax halodurans gen. nov., sp. nov. and Roseivivax halotolerans sp. nov., aerobic bacteriochlorophyll-containing bacteria isolated from a saline lake. . Int J Syst Bacteriol 49, 629634. [View Article] [PubMed]
    [Google Scholar]
  21. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 27312739. [View Article] [PubMed]
    [Google Scholar]
  22. Wu Y.-H., Meng F.-X., Xu L., Zhang X.-Q., Wang C.-S., Oren A., Wu M., Xu X.-W. ( 2013 ). Roseivivax pacificus sp. nov., isolated from deep-sea sediment. . Int J Syst Evol Microbiol 63, 45744579. [View Article] [PubMed]
    [Google Scholar]
  23. Xiao W., Wang Y.-X., Liu J.-H., Wang Z.-G., Zhang X.-X., Ji K.-Y., Lai Y.-H., Wen M.-L., Cui X.-L. ( 2012 ). Roseivivax sediminis sp. nov., a moderately halophilic bacterium isolated from salt mine sediment. . Int J Syst Evol Microbiol 62, 18901895. [View Article] [PubMed]
    [Google Scholar]
  24. Xu P., Li W. J., Tang S. K., Zhang Y. Q., Chen G. Z., Chen H. H., Xu L. H., Jiang C. L. ( 2005 ). Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family ‘Oxalobacteraceae’ isolated from China. . Int J Syst Evol Microbiol 55, 11491153. [View Article] [PubMed]
    [Google Scholar]
  25. Yuan L.-J., Zhang Y.-Q., Guan Y., Wei Y.-Z., Li Q.-P., Yu L.-Y., Li W.-J., Zhang Y.-Q. ( 2008 ). Saccharopolyspora antimicrobica sp. nov., an actinomycete from soil. . Int J Syst Evol Microbiol 58, 11801185. [View Article] [PubMed]
    [Google Scholar]
  26. Zhang Y. Q., Yu L. Y., Wang D., Liu H. Y., Sun C. H., Jiang W., Zhang Y. Q., Li W. J. ( 2008 ). Roseomonas vinacea sp. nov., a Gram-negative coccobacillus isolated from a soil sample. . Int J Syst Evol Microbiol 58, 20702074. [View Article] [PubMed]
    [Google Scholar]
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