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Volume 64, Issue Pt_7

sp. nov., isolated from hydrothermal sediment of the Indian Ocean Free

Abstract

A Gram-staining-positive, aerobic and non-motile strain, 0704P10-1, was isolated from hydrothermal sediment of the Indian Ocean. Phylogenetic, phenotypic and chemotaxonomic data for the organism supported that it belonged to the genus . Strain 0704P10-1 showed 97.2–98.7 % 16S rRNA gene sequence similarities to the type strains of recognized members of the genus . It contained -diaminopimelic acid as the diagnostic diamino acid in the cell wall. MK-8(H) was the only menaquinone detected. The major fatty acids were iso-C, Cω8 and 10-methyl C. Meanwhile, the results of DNA–DNA hybridization studies and other physiological and biochemical tests allowed the genotypic and phenotypic differentiation of strain 0704P10-1 from closely related species. Thus, strain 0704P10-1 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is 0704P10-1 ( = LMG 27493 = CGMCC 1.12511).

  • Published Online:
Funding
This study was supported by the:
  • National Natural Science Foundation of China (Award 312700040 and 41206160)
  • COMRA program (Award DY125-15-R-01)
  • Scientific Research Foundation of Third Institute of Oceanography (Award 2011002)
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2014-07-01
2024-04-25
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References

  1. Ezaki T., Hashimoto Y., Yabuuchi E. ( 1989 ). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. . Int J Syst Bacteriol 39, 224–229. [View Article]
    [Google Scholar]
  2. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368–376. [View Article] [PubMed]
    [Google Scholar]
  3. Gana Dresen I. M., Boes T., Huesing J., Neuhaeuser M., Joeckel K. H. ( 2008 ). New resampling method for evaluating stability of clusters. . BMC Bioinformatics 9, 42. [View Article] [PubMed]
    [Google Scholar]
  4. Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. (editors) ( 1994 ). Methods for General and Molecular Bacteriology. Washington, DC:: American Society for Microbiology;.
     [Google Scholar]
  5. Gonzalez C., Gutierrez C., Ramirez C. ( 1978 ). Halobacterium vallismortis sp. nov. An amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. . Can J Microbiol 24, 710–715. [View Article] [PubMed]
    [Google Scholar]
  6. Gordon R. E., Barnett D. A., Handerhan J. E., Pang C. H.-N. ( 1974 ). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. . Int J Syst Bacteriol 24, 54–63. [View Article]
    [Google Scholar]
  7. Hamada M., Shibata C., Tamura T., Yamamura H., Hayakawa M., Suzuki K. ( 2013 ). Janibacter cremeus sp. nov., an actinobacterium isolated from sea sediment. . Int J Syst Evol Microbiol 63, 3687–3690. [View Article] [PubMed]
    [Google Scholar]
  8. Imamura Y., Ikeda M., Yoshida S., Kuraishi H. ( 2000 ). Janibacter brevis sp. nov., a new trichloroethylene-degrading bacterium isolated from polluted environments. . Int J Syst Evol Microbiol 50, 1899–1903.[PubMed]
    [Google Scholar]
  9. Kageyama A., Takahashi Y., Yasumoto-Hirose M., Kasai H., Shizuri Y., Omura S. ( 2007 ). Janibacter corallicola sp. nov., isolated from coral in Palau. . J Gen Appl Microbiol 53, 185–189. [View Article] [PubMed]
    [Google Scholar]
  10. Kämpfer P., Kroppenstedt R. M. ( 1996 ). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. . Can J Microbiol 42, 989–1005. [View Article]
    [Google Scholar]
  11. Kämpfer P., Terenius O., Lindh J. M., Faye I. ( 2006 ). Janibacter anophelis sp. nov., isolated from the midgut of Anopheles arabiensis . . Int J Syst Evol Microbiol 56, 389–392. [View Article] [PubMed]
    [Google Scholar]
  12. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716–721. [View Article] [PubMed]
    [Google Scholar]
  13. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111–120. [View Article] [PubMed]
    [Google Scholar]
  14. Kovacs N. ( 1956 ). Identification of Pseudomonas pyocyanea by the oxidase reaction. . Nature 178, 703. [View Article] [PubMed]
    [Google Scholar]
  15. Lang E., Kroppenstedt R. M., Swiderski J., Schumann P., Ludwig W., Schmid A., Weiss N. ( 2003 ). Emended description of Janibacter terrae, including ten dibenzofuran-degrading strains and Janibacter brevis as its later heterotypic synonym. . Int J Syst Evol Microbiol 53, 1999–2005. [View Article] [PubMed]
    [Google Scholar]
  16. Lechevalier M. P., Lechevalier H. A. ( 1980 ). The chemotaxonomy of actinomycetes. . In Actinomycete Taxonomy (Special Publication no. 6), pp. 227–291. Edited by Dietz A., Thayer D. W. . Arlington, VA:: Society for Industrial Microbiology;.
     [Google Scholar]
  17. Leifson E. ( 1960 ). Atlas of Bacterial Flagellation. London:: Academic Press;.
     [Google Scholar]
  18. Li W. J., Xu P., Schumann P., Zhang Y. Q., Pukall R., Xu L. H., Stackebrandt E., Jiang C. L. ( 2007 ). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia . . Int J Syst Evol Microbiol 57, 1424–1428. [View Article] [PubMed]
    [Google Scholar]
  19. Li J., Long L. J., Yang L. L., Xu Y., Wang F. Z., Li Q. X., Zhang S., Li W. J. ( 2012 ). Janibacter alkaliphilus sp. nov., isolated from coral Anthogorgia sp. . Antonie van Leeuwenhoek 102, 157–162. [View Article] [PubMed]
    [Google Scholar]
  20. Martin K., Schumann P., Rainey F. A., Schuetze B., Groth I. ( 1997 ). Janibacter limosus gen. nov., sp. nov., a new actinomycete with meso-diaminopimelic acid in the cell wall. . Int J Syst Bacteriol 47, 529–534. [View Article] [PubMed]
    [Google Scholar]
  21. Mesbah M., Premachandran U., Whitman W. B. ( 1989 ). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. . Int J Syst Bacteriol 39, 159–167. [View Article]
    [Google Scholar]
  22. Rzhetsky A., Nei M. ( 1992 ). Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference. . J Mol Evol 35, 367–375. [View Article] [PubMed]
    [Google Scholar]
  23. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
  24. Shivaji S., Chaturvedi P., Begum Z., Pindi P. K., Manorama R., Padmanaban D. A., Shouche Y. S., Pawar S., Vaishampayan P. & other authors ( 2009 ). Janibacter hoylei sp. nov., Bacillus isronensis sp. nov. and Bacillus aryabhattai sp. nov., isolated from cryotubes used for collecting air from the upper atmosphere. . Int J Syst Evol Microbiol 59, 2977–2986. [View Article] [PubMed]
    [Google Scholar]
  25. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 2731–2739. [View Article] [PubMed]
    [Google Scholar]
  26. Tindall B. J., Sikorski J., Smibert R. M., Krieg N. R. ( 2007 ). Phenotypic characterization and the principles of comparative systematics. . In Methods for General and Molecular Microbiology, , 3rd edn., pp. 330–393. Edited by Reddy C. A., Beveridge T. J., Breznak J. A., Marzluf G., Schmidt T. M., Snyder L. R. . Washington, DC:: American Society for Microbiology;. [View Article]
    [Google Scholar]
  27. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. & other authors ( 1987 ). International Committee on Systematic Bacteriology. R eport of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37, 463–464. [View Article]
    [Google Scholar]
  28. Yoon J. H., Lee K. C., Kang S. S., Kho Y. H., Kang K. H., Park Y. H. ( 2000 ). Janibacter terrae sp. nov., a bacterium isolated from soil around a wastewater treatment plant. . Int J Syst Evol Microbiol 50, 1821–1827.[PubMed]
    [Google Scholar]
  29. Yoon J. H., Lee H. B., Yeo S. H., Choi J. E. ( 2004 ). Janibacter melonis sp. nov., isolated from abnormally spoiled oriental melon in Korea. . Int J Syst Evol Microbiol 54, 1975–1980. [View Article] [PubMed]
    [Google Scholar]
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Janibacter indicus sp. nov., isolated from hydrothermal sediment of the Indian Ocean
Int J Syst Evol Microbiol 64, 2353 (2014); https://doi.org/10.1099/ijs.0.059527-0
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