1887

Abstract

In 2000, an actinomycete strain that showed strong antibacterial activity in culture extracts was isolated from a soil sample. The antibiotic activity corresponds to a lipopeptide complex that was named friulimycin, as the producing micro-organism was isolated from a soil sample from the region of Friaul in Italy. Taxonomic investigations showed that the producer strain belonged to a novel species of the genus , for which the name was proposed. During further taxonomic studies, another antibiotic-producing isolate belonging to the genus , FH 2241, was characterized; in a patent, the name ‘’ was proposed for this strain. This organism was shown to be related to . ‘’ was never described in detail and the name was never validly published. Here we present a complete description of sp. Nov. (type strain FH 2241 = ATCC 31145 = DSM 43867) and an emended description of (type strain HAG 010964 = DSM 45797 = CCUG 63250).

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2014-02-01
2024-03-28
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References

  1. Aretz W., Meiwes J., Seibert G., Vobis G., Wink J. ( 2000 ). Friulimicins: novel lipopeptide antibiotics with peptidoglycan synthesis inhibiting activity from Actinoplanes friuliensis sp. nov. I. Taxonomic studies of the producing microorganism and fermentation. . J Antibiot (Tokyo) 53, 807815. [View Article] [PubMed]
    [Google Scholar]
  2. Aretz W., Meiwes J., Seibert G., Vobis G., Wink J. ( 2001 ). Actinoplanes friuliensis sp. nov. In Validation of publication of new names and new combinations previously effectively published outside the IJSEM, Validation List no. 80. . Int J Syst Evol Microbiol 51, 793794. [View Article] [PubMed]
    [Google Scholar]
  3. Brosius J., Palmer M. L., Kennedy P. J., Noller H. F. ( 1978 ). Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli . . Proc Natl Acad Sci U S A 75, 48014805. [View Article] [PubMed]
    [Google Scholar]
  4. Bruce J. ( 1996 ). Automated system rapidly identifies and characterizes micro-organisms in food. . Food Technol 50, 7781.
    [Google Scholar]
  5. Celmer W. D., Moppett C. E., Cullen W. P., Routien J. B., Jefferson M. T., Shibakawa R., Tone J. ( 1977 ). Antibiotic compound 41,012. US Patent 4,001,397.
    [Google Scholar]
  6. Collins M. D., Jones D. ( 1980 ). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. . J Appl Bacteriol 48, 459470. [View Article]
    [Google Scholar]
  7. Collins M. D., Pirouz T., Goodfellow M., Minnikin D. E. ( 1977 ). Distribution of menaquinones in actinomycetes and corynebacteria. . J Gen Microbiol 100, 221230. [View Article] [PubMed]
    [Google Scholar]
  8. Couch J. N. ( 1963 ). Some new genera and species of the Actinoplanaceae . . J Elisha Mitchell Sci Soc 79, 5370.
    [Google Scholar]
  9. Felsenstein J. ( 1985 ). Confidence limits of phylogenies: an approach using the bootstrap. . Evolution 39, 783791. [View Article]
    [Google Scholar]
  10. Felsenstein J. ( 2005 ). phylip (Phylogeny Inference Package) version 3.6. . Distributed by the author. Department of Genome Sciences, University of Washington;, Seattle, USA:.
    [Google Scholar]
  11. Goodfellow M., Stanton L. J., Simpson K. E., Minnikin D. E. ( 1990 ). Numerical and chemical classification of Actinoplanes and some related actinomycetes. . J Gen Microbiol 136, 1936. [View Article]
    [Google Scholar]
  12. Groth I., Schumann P., Weiss N., Martin K., Rainey F. A. ( 1996 ). Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. . Int J Syst Bacteriol 46, 234239. [View Article] [PubMed]
    [Google Scholar]
  13. Hasegawa T., Takizawa M., Tanida S. ( 1983 ). A rapid analysis for chemical grouping of aerobic actinomycetes. . J Gen Appl Microbiol 29, 319322. [View Article]
    [Google Scholar]
  14. Humble M. W., King A., Phillips I. ( 1977 ). API ZYM: a simple rapid system for the detection of bacterial enzymes. . J Clin Pathol 30, 275277. [View Article] [PubMed]
    [Google Scholar]
  15. Jukes T. H., Cantor C. R. ( 1969 ). Evolution of protein molecules. . In Mammalian Protein Metabolism, vol. 3, pp. 21132. Edited by Munro H. N. . New York:: Academic Press;. [View Article]
    [Google Scholar]
  16. Kämpfer P., Kroppenstedt R. M. ( 1996 ). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. . Can J Microbiol 42, 9891005. [View Article]
    [Google Scholar]
  17. Kämpfer P., Steiof M., Dott W. ( 1991 ). Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. . Microb Ecol 21, 227251. [View Article] [PubMed]
    [Google Scholar]
  18. Kämpfer P., Huber B., Thummes K., Grün-Wollny I., Busse H.-J. ( 2007 ). Actinoplanes couchii sp. nov.. Int J Syst Evol Microbiol 57, 721724. [View Article] [PubMed]
    [Google Scholar]
  19. Kroppenstedt R. M. ( 1985 ). Fatty acid and menaquinone analysis of actinomycetes and related organisms. . In Chemical Methods in Bacterial Systematics (Society for Applied Bacteriology Technical Series, vol. 20), pp. 173199. Edited by Goodfellow M., Minnikin D. E. . New York:: Academic Press;.
    [Google Scholar]
  20. Kutzner H. J., Kroppenstedt R. M., Korn-Wendisch F. ( 1986 ). Methoden zur Untersuchung von Streptomyceten und einigen anderen Actinomyceten. , , 4th edn.. Report of the Institute for Microbiology, Technical University, Darmstadt, and German Culture Collection (DSMZ), Braunschweig. Braunschweig:: DSMZ;.
    [Google Scholar]
  21. Lane D. J. ( 1991 ). 16S/23S rRNA sequencing. . In Nucleic Acid Techniques in Bacterial Systematics, pp. 115175. Edited by Stackebrandt E., Goodfellow M. . Chichester:: Wiley;.
    [Google Scholar]
  22. Lechevalier M. P., De Bièvre C., Lechevalier H. ( 1977 ). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. . Biochem Syst Ecol 5, 249260. [View Article]
    [Google Scholar]
  23. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S. & other authors ( 2004 ). arb: a software environment for sequence data. . Nucleic Acids Res 32, 13631371. [View Article] [PubMed]
    [Google Scholar]
  24. Matsumoto A., Takahashi Y., Kudo T., Seino A., Iwai Y., Ōmura S. ( 2000 ). Actinoplanes capillaceus sp. nov., a new species of the genus Actinoplanes . . Antonie van Leeuwenhoek 78, 107115. [View Article] [PubMed]
    [Google Scholar]
  25. Minnikin D. E., Patel P. V., Alshamaony L., Goodfellow M. ( 1977 ). Polar lipid composition in the classification of Nocardia and related bacteria. . Int J Syst Bacteriol 27, 104117. [View Article]
    [Google Scholar]
  26. Pruesse E., Quast C., Knittel K., Fuchs B. M., Ludwig W., Peplies J., Glöckner F. O. ( 2007 ). silva: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with arb . . Nucleic Acids Res 35, 71887196. [View Article] [PubMed]
    [Google Scholar]
  27. Rainey F. A., Ward-Rainey N. L., Kroppenstedt R. M., Stackebrandt E. ( 1996 ). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov.. Int J Syst Bacteriol 46, 10881092. [View Article] [PubMed]
    [Google Scholar]
  28. Shirling E. B., Gottlieb D. ( 1966 ). Methods for characterization of Streptomyces species. . Int J Syst Bacteriol 16, 313340. [View Article]
    [Google Scholar]
  29. Stamatakis A. ( 2006 ). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. . Bioinformatics 22, 26882690. [View Article] [PubMed]
    [Google Scholar]
  30. Tóth E. M., Schumann P., Borsodi A. K., Kéki Z., Kovács A. L., Márialigeti K. ( 2008 ). Wohlfahrtiimonas chitiniclastica gen. nov., sp. nov., a new gammaproteobacterium isolated from Wohlfahrtia magnifica (Diptera: Sarcophagidae). . Int J Syst Evol Microbiol 58, 976981. [View Article] [PubMed]
    [Google Scholar]
  31. Wink J. M. ( 2002 ). Polyphasic taxonomy and antibiotic formation in some closely related genera of the family Pseudonocardiaceae . . Recent Res Develop Antibiot 2, 97140.
    [Google Scholar]
  32. Wink J. M. ( 2004 ). Actinomycetes taxonomy in the Aventis strain collection. . In Microbial Genetic Resources and Biodiscovery. Edited by Kurtböke I., Swings J. . Nambour, Australia:: Queensland Complete Printing Services;, 249260.
    [Google Scholar]
  33. Wink J. M., Grabley S., Granzer E., Hütter K., Ludwig D., Mayer M., Thiericke R., Till G., Wink J., Philipps S., Zeeck A. ( 1992 ). Secondary metabolites by chemical screening. 8. Decarestrictines, a new family of inhibitors of cholesterol biosynthesis from Penicillium. I. Strain description, fermentation, isolation and properties. . J Antibiot (Tokyo) 45, 5665. [View Article] [PubMed]
    [Google Scholar]
  34. Wink J. M., Kroppenstedt R. M., Schumann P., Seibert G., Stackebrandt E. ( 2006 ). Actinoplanes liguriensis sp. nov. and Actinoplanes teichomyceticus sp. nov.. Int J Syst Evol Microbiol 56, 21252130. [View Article] [PubMed]
    [Google Scholar]
  35. Yarza P., Richter M., Peplies J., Euzeby J., Amann R., Schleifer K. H., Ludwig W., Glöckner F. O., Rosselló-Móra R. ( 2008 ). The All-Species Living Tree project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. . Syst Appl Microbiol 31, 241250. [View Article] [PubMed]
    [Google Scholar]
  36. Ziemke F., Höfle M. G., Lalucat J., Rosselló-Mora R. ( 1998 ). Reclassification of Shewanella putrefaciens Owen’s genomic group II as Shewanella baltica sp. nov.. Int J Syst Bacteriol 48, 179186. [View Article] [PubMed]
    [Google Scholar]
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