1887

Abstract

Five yeast strains, phenotypically indistinguishable from and , were recovered from different animal-related samples. One strain was isolated from a bacon processing plant in Denmark, two strains from chicken liver in the USA, one strain from chicken breast in Hungary and one from minced beef in Hungary. Comparisons of the sequences of their large subunit rRNA gene D1/D2 domain and the internal transcribed spacer (ITS) regions revealed that, despite their phenotypic similarity, they represent a novel yeast species of the clade with being the genotypically closest relative (LSU rRNA gene D1/D2 and ITS region similarity of 97.0 and 93.7 %, respectively). f.a., sp. nov. is proposed to accommodate these strains with F6-17 ( = CBS 11013 = CCUG 56725) as the type strain. Some D1/D2 sequences of yeasts from marine habitats were found in the GenBank database that were identical to those of the strains of f.a., sp. nov. Unfortunately, these strains were not available for our study.

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2013-12-01
2019-10-14
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References

  1. Bigey F., Tuery K., Bougard D., Nicaud J.-M., Moulin G.. ( 2003;). Identification of a triacylglycerol lipase gene family in Candida deformans: molecular cloning and functional expression. . Yeast 20:, 233–248. [CrossRef][PubMed]
    [Google Scholar]
  2. Chilvers K. F., Reed R. H., Perry J. D.. ( 1999;). Phototoxicity of Rose Bengal in mycological media – implications for laboratory practice. . Lett Appl Microbiol 28:, 103–107. [CrossRef][PubMed]
    [Google Scholar]
  3. Daniel H.-M., Vrancken G., Takrama J. F., Camu N., De Vos P., De Vuyst L.. ( 2009;). Yeast diversity of Ghanaian cocoa bean heap fermentations. . FEMS Yeast Res 9:, 774–783. [CrossRef][PubMed]
    [Google Scholar]
  4. Deák T.. ( 2008;). Detection and enumeration. . In Handbook of Food Spoilage Yeasts, , 2nd edn., p. 212. Boca Raton, FL:: CRC Press;.
    [Google Scholar]
  5. Encinas J.-P., López-Díaz T.-M., García-López M.-L., Otero A., Moreno B.. ( 2000;). Yeast populations on Spanish fermented sausages. . Meat Sci 54:, 203–208. [CrossRef][PubMed]
    [Google Scholar]
  6. Felsenstein J.. ( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39:, 783–791. [CrossRef]
    [Google Scholar]
  7. Groenewald M., Smith M. Th.. ( 2013;). The teleomorph state of Candida deformans Langeron & Guerra and description of Yarrowia yakushimensis comb. nov.. Antonie van Leeuwenhoek 103:, 1023–1028. [CrossRef][PubMed]
    [Google Scholar]
  8. Groenewald M., Boekhout T., Neuvéglise C., Gaillardin C., van Dijck P. W. M., Wyss M.. ( 2013;). Yarrowia lipolytica: safety assessment of an oleaginous yeast with a great industrial potential. . Crit Rev Microbiol. [CrossRef][PubMed]
    [Google Scholar]
  9. Ismail S. A., Deák T., El-Rahman H. A., Yassien M. A., Beuchat L. R.. ( 2000;). Presence and changes in populations of yeasts on raw and processed poultry products stored at refrigeration temperature. . Int J Food Microbiol 62:, 113–121. [CrossRef][PubMed]
    [Google Scholar]
  10. Jespersen L., Nielsen D. S., Hønholt S., Jakobsen M.. ( 2005;). Occurrence and diversity of yeasts involved in fermentation of West African cocoa beans. . FEMS Yeast Res 5:, 441–453. [CrossRef][PubMed]
    [Google Scholar]
  11. Knutsen A. K., Robert V., Poot G. A., Epping W., Figge M., Holst-Jensen A., Skaar I., Smith M. Th.. ( 2007;). Polyphasic re-examination of Yarrowia lipolytica strains and the description of three novel Candida species: Candida oslonensis sp. nov., Candida alimentaria sp. nov. and Candida hollandica sp. nov.. Int J Syst Evol Microbiol 57:, 2426–2435. [CrossRef][PubMed]
    [Google Scholar]
  12. Kurtzman C. P.. ( 2005;). New species and a new combination in the Hyphopichia and Yarrowia yeast clades. . Antonie van Leeuwenhoek 88:, 121–130. [CrossRef][PubMed]
    [Google Scholar]
  13. Kurtzman C. P.. ( 2011;). Yarrowia van der Walt von Arx (1980). . In The Yeasts, a Taxonomic Study, , 5th edn., pp. 927–929. Edited by Kurtzman C. P., Fell J. W., Boekhout T... Amsterdam:: Elsevier;. [CrossRef]
    [Google Scholar]
  14. Kurtzman C. P., Robnett C. J.. ( 1998;). Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. . Antonie van Leeuwenhoek 73:, 331–371. [CrossRef][PubMed]
    [Google Scholar]
  15. Kurtzman C. P., Robnett C. J.. ( 2013;). Relationships among genera of the Saccharomycotina (Ascomycota) from multigene phylogenetic analysis of type species. . FEMS Yeast Res 13:, 23–33. [CrossRef][PubMed]
    [Google Scholar]
  16. Kurtzman C. P., Fell J. W., Boekhout T.. ( 2011a;). The Yeasts, a Taxonomic Study, , 5th edn.. Amsterdam:: Elsevier;.
    [Google Scholar]
  17. Kurtzman C. P., Fell J. W., Boekhout T., Robert V.. ( 2011b;). Methods for isolation, phenotypic characterization and maintence of yeasts. . In The Yeasts, a Taxonomic Study, , 5th edn., pp. 87–107. Edited by Kurtzman C. P., Fell J. W., Boekhout T... Amsterdam:: Elsevier;. [CrossRef]
    [Google Scholar]
  18. Lachance M. A.. ( 2012;). In defense of yeast sexual life cycles: the forma asexualis – An informal proposal. . Yeast Newsletter 61:, 24–25.
    [Google Scholar]
  19. Lachance M. A., Boekhout T., Scorzetti G., Fell J. W., Kurtzman C. P.. ( 2011;). Candida Berkhout (1923). . In The Yeasts, a Taxonomic Study, , 5th edn., pp. 987–1278. Edited by Kurtzman C. P., Fell J. W., Boekhout T... Amsterdam:: Elsevier;. [CrossRef]
    [Google Scholar]
  20. Limtong S., Youngmanitchai W., Kawasaki H., Seki T.. ( 2008;). Candida phangngensis sp. nov., an anamorphic yeast species in the Yarrowia clade, isolated from water in mangrove forests in Phang-Nga Province, Thailand. . Int J Syst Evol Microbiol 58:, 515–519. [CrossRef][PubMed]
    [Google Scholar]
  21. Mayoral M. B., Martín R., Sanz A., Hernández P. E., González I., García T.. ( 2005;). Detection of Kluyveromyces marxianus and other spoilage yeasts in yoghurt using a PCR-culture technique. . Int J Food Microbiol 105:, 27–34. [CrossRef][PubMed]
    [Google Scholar]
  22. McIlvaine T. C.. ( 1921;). A buffer solution for colorimetric comparison. . J Biol Chem 49:, 183–186.
    [Google Scholar]
  23. McNeill J., Barrie F. R., Buck W. R., Demoulin V., Greuter W., Hawksworth D. L., Herendeen P. S., Knapp S., Marhold K.. & other authors ( 2012;). International Code of Nomenclature for algae, fungi, and plants (Melbourne Code). . Koeltz Scientific Books;. http://www.iapt-taxon.org/nomen/main.php
  24. Mirbagheri M., Nahvi I., Emtiazi G., Mafakher L., Darvishi F.. ( 2012;). Taxonomic characterization and potential biotechnological applications of Yarrowia lipolytica isolated from meat and its products. . Jundishapur J Microbiol 5:, 346–351.
    [Google Scholar]
  25. Nei M., Kumar S.. ( 2000;). Molecular Evolution and Phylogenetics. New York:: Oxford University Press;.
    [Google Scholar]
  26. Nielsen D. S., Jacobsen T., Jespersen L., Koch A. G., Arneborg N.. ( 2008;). Occurrence and growth of yeasts in processed meat products – Implications for potential spoilage. . Meat Sci 80:, 919–926. [CrossRef][PubMed]
    [Google Scholar]
  27. Péter G., Dlauchy D., Vasdinyei R., Tornai-Lehoczki J., Deák T.. ( 2004;). Candida galli sp. nov., a new yeast from poultry. . Antonie van Leeuwenhoek 86:, 105–110. [CrossRef][PubMed]
    [Google Scholar]
  28. Péter G., Tornai-Lehoczki J., Dlauchy D.. ( 2009;). Candida ogatae sp. nov., an anamorphic member of the Kuraishia clade. . FEMS Yeast Res 9:, 328–333. [CrossRef][PubMed]
    [Google Scholar]
  29. Pincus D. H., Salkin I. F., Hurd N. J., Levy I. L., Kemna M. A.. ( 1988;). Modification of potassium nitrate assimilation test for identification of clinically important yeasts. . J Clin Microbiol 26:, 366–368.[PubMed]
    [Google Scholar]
  30. Samson R. A., Hoekstra E. S., Frisvad J. C.. (editors) ( 2004;). Introduction to Food- and Airborne Fungi, , 7th edn.. Utrecht:: Centraalbureau voor Schimmelcultures;.
    [Google Scholar]
  31. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S.. ( 2011;). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28:, 2731–2739. [CrossRef][PubMed]
    [Google Scholar]
  32. Vasdinyei R., Deák T.. ( 2003;). Characterization of yeast isolates originating from Hungarian dairy products using traditional and molecular identification techniques. . Int J Food Microbiol 86:, 123–130. [CrossRef][PubMed]
    [Google Scholar]
  33. Wyder M.-T., Bachmann H.-P., Puhan Z.. ( 1999;). Role of selected yeasts in cheese ripening: an evaluation in foil wrapped Raclette cheese. . Lebenson Wiss Technol 32:, 333–343. [CrossRef]
    [Google Scholar]
  34. Zhang Z., Schwartz S., Wagner L., Miller W.. ( 2000;). A greedy algorithm for aligning DNA sequences. . J Comput Biol 7:, 203–214. [CrossRef][PubMed]
    [Google Scholar]
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