Ureibacillus defluvii sp. nov., isolated from a thermophilic microbial fuel cell

References

1. Andersson M., Laukkanen M., Nurmiaho-Lassila E.-L., Rainey F. A., Niemela S. I., Salkinoja-Salonen M. ( 1995 ). Bacillus thermosphaericus sp. nov. a new thermophilic ureolytic: Bacillus isolated from air. . Syst Appl Microbiol 18, 203–220. [View Article]
   [Google Scholar]
2. Baker G. C., Smith J. J., Cowan D. A. ( 2003 ). Review and re-analysis of domain-specific 16S primers. . J Microbiol Methods 55, 541–555. [View Article] [PubMed]
   [Google Scholar]
3. Breznak J. A., Costilow R. N. ( 1994 ). Physicochemical factors in growth. . In Methods for General and Molecular Bacteriology, pp. 137–154. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
   [Google Scholar]
4. Collins M. D., Pirouz T., Goodfellow M., Minnikin D. E. ( 1977 ). Distribution of menaquinones in actinomycetes and corynebacteria. . J Gen Microbiol 100, 221–230. [View Article] [PubMed]
   [Google Scholar]
5. Dong X.-Z., Cai M.-Y. (editors) ( 2001 ). Determination of biochemical properties. . In Manual for the Systematic Identification of General Bacteria , pp. 370–398. Beijing, China:: Science Press (in Chinese);.
   [Google Scholar]
6. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368–376. [View Article] [PubMed]
   [Google Scholar]
7. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783–791. [View Article]
   [Google Scholar]
8. Fortina M. G., Pukall R., Schumann P., Mora D., Parini C., Manachini P. L., Stackebrandt E. ( 2001 ). Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson et al. 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov.. Int J Syst Evol Microbiol 51, 447–455.[PubMed] [CrossRef]
   [Google Scholar]
9. Kim B.-Y., Lee S.-Y., Weon H.-Y., Kwon S.-W., Go S.-J., Park Y.-K., Schumann P., Fritze D. ( 2006 ). Ureibacillus suwonensis sp. nov., isolated from cotton waste composts. . Int J Syst Evol Microbiol 56, 663–666. [View Article] [PubMed]
   [Google Scholar]
10. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716–721. [View Article] [PubMed]
    [Google Scholar]
11. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111–120. [View Article] [PubMed]
    [Google Scholar]
12. Logan N. A., Berge O., Bishop A. H., Busse H.-J., De Vos P., Fritze D., Heyndrickx M., Kämpfer P., Rabinovitch L. & other authors ( 2009 ). Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. . Int J Syst Evol Microbiol 59, 2114–2121. [View Article] [PubMed]
    [Google Scholar]
13. McCarthy A. J., Cross T. ( 1984 ). A taxonomic study of Thermomonospora and other monosporic actinomycetes. . J Gen Microbiol 130, 5–25.
    [Google Scholar]
14. Mesbah M., Premachandran U., Whitman W. B. ( 1989 ). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. . Int J Syst Bacteriol 39, 159–167. [View Article]
    [Google Scholar]
15. Minnikin D. E., Collins M. D., Goodfellow M. ( 1979 ). Fatty-acid and polar lipid-composition in the classification of Cellulomonas, Oerskovia and related taxa. . J Appl Microbiol 47, 87–95.
    [Google Scholar]
16. Rzhetsky A., Nei M. ( 1992 ). A simple method for estimating and testing minimum-evolution trees. . Mol Biol Evol 9, 945–967.
    [Google Scholar]
17. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
18. Sambrook J., Russell D. W. ( 2001 ). Molecular Cloning: a Laboratory Manual, , 3rd edn.. Cold Spring Harbor, NY:: Cold Spring Harbor Laboratory;.
    [Google Scholar]
19. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE:: MIDI;.
    [Google Scholar]
20. Stackebrandt E., Goebel B. M. ( 1994 ). Taxonomic note: a place for DNA–DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. . Int J Syst Bacteriol 44, 846–849. [View Article]
    [Google Scholar]
21. Tamaoka J., Katayama-Fujimura Y., Kuraishi H. ( 1983 ). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. . J Appl Bacteriol 54, 31–36. [View Article]
    [Google Scholar]
22. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 2731–2739. [View Article] [PubMed]
    [Google Scholar]
23. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. ( 1997 ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25, 4876–4882. [View Article] [PubMed]
    [Google Scholar]
24. Weon H.-Y., Lee S.-Y., Kim B.-Y., Noh H.-J., Schumann P., Kim J.-S., Kwon S.-W. ( 2007 ). Ureibacillus composti sp. nov. and Ureibacillus thermophilus sp. nov., isolated from livestock-manure composts. . Int J Syst Evol Microbiol 57, 2908–2911. [View Article] [PubMed]
    [Google Scholar]