1887

Abstract

A novel desiccation-tolerant, xeroprotectant-producing bacterium, designated strain 4J27, was isolated from a rhizosphere subjected to seasonal drought in Granada, Spain. Phylogenetic analysis based on 16S rRNA gene sequencing placed the isolate within the genus , its closest relative being Shep3 DSM 18606, with which it showed 99.23 % 16S rRNA gene sequence similarity. DNA–DNA hybridization measurements showed less than 25 % relatedness between strain 4J27 and DSM 18606. The DNA base composition of strain 4J27 was 65.3 mol%. The main fatty acids were anteiso C, anteiso C, C and iso C and the major menaquinone was MK-9 (H). The peptidoglycan type was A3α with an -Lys–-Ser–-Thr–-Ala interpeptide bridge. The bacterium tested positive for catalase activity and negative for oxidase activity. Phylogenetic, chemotaxonomic and phenotypic analyses indicated that the desiccation-tolerant strain 4J27 represents a novel species within the genus , for which the name is proposed. The type strain is 4J27 ( = CECT 8257 = LMG 27359).

Funding
This study was supported by the:
  • Spanish Ministry of Science and Innovation (Award P07-RNM-02588)
  • Andalusian Regional Government (Award CTM2009-09270)
  • Ministry of Science and Innovation
  • European Regional Development Funds (EU)
  • This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.052902-0
2013-11-01
2024-04-23
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/63/11/4174.html?itemId=/content/journal/ijsem/10.1099/ijs.0.052902-0&mimeType=html&fmt=ahah

References

  1. Arakawa T., Timasheff S. N. ( 1982 ). Stabilization of protein structure by sugars. . Biochemistry 21, 65366544. [View Article] [PubMed]
    [Google Scholar]
  2. Borodina E., Kelly D. P., Schumann P., Rainey F. A., Ward-Rainey N. L., Wood A. P. ( 2002 ). Enzymes of dimethylsulfone metabolism and the phylogenetic characterization of the facultative methylotrophs Arthrobacter sulfonivorans sp. nov., Arthrobacter methylotrophus sp. nov., and Hyphomicrobium sulfonivorans sp. nov.. Arch Microbiol 177, 173183. [View Article] [PubMed]
    [Google Scholar]
  3. Brown A. D. ( 1976 ). Microbial water stress. . Bacteriol Rev 40, 803846.[PubMed]
    [Google Scholar]
  4. Cashion P., Holder-Franklin M. A., McCully J., Franklin M. ( 1977 ). A rapid method for the base ratio determination of bacterial DNA. . Anal Biochem 81, 461466. [View Article] [PubMed]
    [Google Scholar]
  5. Conn H. J., Dimmick I. ( 1947 ). Soil bacteria similar in morphology to Mycobacterium and Corynebacterium . . J Bacteriol 54, 291303.[PubMed]
    [Google Scholar]
  6. De Ley J., Cattoir H., Reynaerts A. ( 1970 ). The quantitative measurement of DNA hybridization from renaturation rates. . Eur J Biochem 12, 133142. [View Article] [PubMed]
    [Google Scholar]
  7. Ding L., Hirose T., Yokota A. ( 2009 ). Four novel Arthrobacter species isolated from filtration substrate. . Int J Syst Evol Microbiol 59, 856862. [View Article] [PubMed]
    [Google Scholar]
  8. DSMZ ( 2001 ). Catalogue of Strains, 7th edn. , p. 617. Braunschweig:: DSMZ;. http://www.dsmz.de/fileadmin/Bereiche/Microbiology/Dateien/Key_to_Murein2.pdf
    [Google Scholar]
  9. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783791. [View Article]
    [Google Scholar]
  10. Germida J. J., Casida L. E. Jr ( 1980 ). Myceloid growth of Arthrobacter globiformis and other Arthrobacter species. . J Bacteriol 144, 11521158.[PubMed]
    [Google Scholar]
  11. Guindon S., Gascuel O. ( 2003 ). A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. . Syst Biol 52, 696704. [View Article] [PubMed]
    [Google Scholar]
  12. Huang Y., Zhao N., He L., Wang L., Liu Z., You M., Guan F. ( 2005 ). Arthrobacter scleromae sp. nov. isolated from human clinical specimens. . J Clin Microbiol 43, 14511455. [View Article] [PubMed]
    [Google Scholar]
  13. Huss V. A. R., Festl H., Schleifer K. H. ( 1983 ). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. . Syst Appl Microbiol 4, 184192. [View Article] [PubMed]
    [Google Scholar]
  14. Jones D., Keddie R. M. ( 1992 ). The genus Arthrobacter . . In The Prokaryotes: a Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, , 2nd edn., vol. 2, pp. 12831299. Edited by Balows A., Truper H. G., Dworkin M., Harder W., Schleifer K. H. . NY:: Springer;.
    [Google Scholar]
  15. Julca I., Alaminos M., González-López J., Manzanera M. ( 2012 ). Xeroprotectants for the stabilization of biomaterials. . Biotechnol Adv 30, 16411654. [View Article] [PubMed]
    [Google Scholar]
  16. Kallimanis A., Kavakiotis K., Perisynakis A., Spröer C., Pukall R., Drainas C., Koukkou A. I. ( 2009 ). Arthrobacter phenanthrenivorans sp. nov., to accommodate the phenanthrene-degrading bacterium Arthrobacter sp. strain Sphe3. . Int J Syst Evol Microbiol 59, 275279. [View Article] [PubMed]
    [Google Scholar]
  17. Keddie R. M., Collins M. D., Jones D. ( 1986 ). Genus Arthrobacter Conn and Dimmick 1947, 300AL. . In Bergey's Manual of Systematic Bacteriology, pp. 12881301. Edited by Sneath P. H. A., Mair N. S., Sharpe M. E., Holt J. G. . Baltimore:: Williams & Wilkins;.
    [Google Scholar]
  18. Kim K. K., Lee K. C., Oh H. M., Kim M. J., Eom M. K., Lee J. S. ( 2008 ). Arthrobacter defluvii sp. nov., 4-chlorophenol-degrading bacteria isolated from sewage. . Int J Syst Evol Microbiol 58, 19161921. [View Article] [PubMed]
    [Google Scholar]
  19. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716721. [View Article] [PubMed]
    [Google Scholar]
  20. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111120. [View Article] [PubMed]
    [Google Scholar]
  21. Knapp S., Ladenstein R., Galinski E. A. ( 1999 ). Extrinsic protein stabilization by the naturally occurring osmolytes β-hydroxyectoine and betaine. . Extremophiles 3, 191198. [View Article] [PubMed]
    [Google Scholar]
  22. Kodama Y., Yamamoto H., Amano N., Amachi T. ( 1992 ). Reclassification of two strains of Arthrobacter oxydans and proposal of Arthrobacter nicotinovorans sp. nov.. Int J Syst Bacteriol 42, 234239. [View Article] [PubMed]
    [Google Scholar]
  23. Kuykendall L. D., Roy M. A., O'Neill J. J., Devine T. E. ( 1988 ). Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradorhizobium japonicum . . Int J Syst Bacteriol 38, 358361. [View Article]
    [Google Scholar]
  24. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. & other authors ( 2007 ). clustal w and clustal_x version 2.0. . Bioinformatics 23, 29472948. [View Article] [PubMed]
    [Google Scholar]
  25. MacKenzie S. L. ( 1987 ). Gas chromatographic analysis of amino acids as the N-heptafluorobutyryl isobutyl esters. . J Assoc Anal Chem 70, 151160.[PubMed]
    [Google Scholar]
  26. Manzanera M., García de Castro A., Tøndervik A., Rayner-Brandes M., Strøm A. R., Tunnacliffe A. ( 2002 ). Hydroxyectoine is superior to trehalose for anhydrobiotic engineering of Pseudomonas putida KT2440. . Appl Environ Microbiol 68, 43284333. [View Article] [PubMed]
    [Google Scholar]
  27. Manzanera M., Vilchez S., Tunnacliffe A. ( 2004a ). Plastic encapsulation of stabilized Escherichia coli and Pseudomonas putida . . Appl Environ Microbiol 70, 31433145. [View Article] [PubMed]
    [Google Scholar]
  28. Manzanera M., Vilchez S., Tunnacliffe A. ( 2004b ). High survival and stability rates of Escherichia coli dried in hydroxyectoine. . FEMS Microbiol Lett 233, 347352. [View Article] [PubMed]
    [Google Scholar]
  29. Mesbah M., Premachandran U., Whitman W. ( 1989 ). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. . Int J Syst Bacteriol 39, 159167. [View Article]
    [Google Scholar]
  30. Miller L. T. ( 1982 ). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters including hydroxy acids. . J Clin Microbiol 16, 584586.[PubMed]
    [Google Scholar]
  31. Narváez-Reinaldo J. J., Barba I., González-López J., Tunnacliffe A., Manzanera M. ( 2010 ). Rapid method for isolation of desiccation-tolerant strains and xeroprotectants. . Appl Environ Microbiol 76, 52545262. [View Article] [PubMed]
    [Google Scholar]
  32. National Committee for Clinical Laboratory Standards ( 1997 ). Minimum inhibitory concentration (MIC) interpretive standards (g/ml) for organisms other than Haemophilus spp., Neisseria gonorrhoeae, and Streptococcus spp. NCCLS document M7–A4. Wayne, PA:: National Committee for Clinical Laboratory Standards;.
    [Google Scholar]
  33. Piddock L. J. V. ( 1990 ). Techniques used for the determination of antimicrobial resistance and sensitivity in bacteria. . J Appl Bacteriol 68, 307318. [View Article] [PubMed]
    [Google Scholar]
  34. Reddy G. S. N., Prakash J. S. S., Matsumoto G. I., Stackebrandt E., Shivaji S. ( 2002 ). Arthrobacter roseus sp. nov., a psychrophilic bacterium isolated from an Antarctic cyanobacterial mat sample. . Int J Syst Evol Microbiol 52, 10171021. [View Article] [PubMed]
    [Google Scholar]
  35. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406425.[PubMed]
    [Google Scholar]
  36. Schippers-Lammertse A. F., Muijsers A. O., Klatser-Oedekerk K. B. ( 1963 ). Arthrobacter polychromogenes nov. spec., its pigments, and a bacteriophage of this species. . Antonie van Leeuwenhoek 29, 115. [View Article]
    [Google Scholar]
  37. Schleifer K. H. ( 1985 ). Analysis of the chemical composition and primary structure of murein. . Methods Microbiol 18, 123156. [View Article]
    [Google Scholar]
  38. Schleifer K. H., Kandler O. ( 1972 ). Peptidoglycan types of bacterial cell walls and their taxonomic implications. . Bacteriol Rev 36, 407477.[PubMed]
    [Google Scholar]
  39. Sguros P. L. ( 1955 ). Microbial transformations of the tobacco alkaloids. I. Cultural and morphological characteristics of a nicotinophile. . J Bacteriol 69, 2837.[PubMed]
    [Google Scholar]
  40. Staneck J. L., Roberts G. D. ( 1974 ). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. . Appl Microbiol 28, 226231.[PubMed]
    [Google Scholar]
  41. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 27312739. [View Article] [PubMed]
    [Google Scholar]
  42. Tindall B. J. ( 1990a ). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. . Syst Appl Microbiol 13, 128130. [View Article]
    [Google Scholar]
  43. Tindall B. J. ( 1990b ). Lipid composition of Halobacterium lacusprofundi . . FEMS Microbiol Lett 66, 199202. [View Article]
    [Google Scholar]
  44. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. & other authors ( 1987 ). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37, 463464. [View Article]
    [Google Scholar]
  45. Westerberg K., Elväng A. M., Stackebrandt E., Jansson J. K. ( 2000 ). Arthrobacter chlorophenolicus sp. nov., a new species capable of degrading high concentrations of 4-chlorophenol. . Int J Syst Evol Microbiol 50, 20832092. [View Article] [PubMed]
    [Google Scholar]
  46. Whiton R. S., Lau P., Morgan S. L., Gilbart J., Fox A. ( 1985 ). Modifications in the alditol acetate method for analysis of muramic acid and other neutral and amino sugars by capillary gas chromatography-mass spectrometry with selected ion monitoring. . J Chromatogr A 347, 109120. [View Article] [PubMed]
    [Google Scholar]
  47. Yancey P. H., Clark M. E., Hand S. C., Bowlus R. D., Somero G. N. ( 1982 ). Living with water stress: evolution of osmolyte systems. . Science 217, 12141222. [View Article] [PubMed]
    [Google Scholar]
  48. Yassin A. F., Spröer C., Siering C., Hupfer H., Schumann P. ( 2011 ). Arthrobacter equi sp. nov., isolated from veterinary clinical material. . Int J Syst Evol Microbiol 61, 20892094. [View Article] [PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.052902-0
Loading
/content/journal/ijsem/10.1099/ijs.0.052902-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error