1887

Abstract

A novel obligately anaerobic, non-spore-forming, rod-shaped, non-motile Gram-reaction-negative bacterium was isolated from infant faeces. The strain, designated NSB1, was able to grow on rich media at 30–37 °C, in the presence of up to 2 % (w/v) Oxgall and 2 % (w/v) NaCl. Cells of strain NSB1 produced catalase, but not urease and indole. Aesculin was not hydrolysed. The strain was able to utilize -glucose, lactose, maltose, mannose and raffinose as electron donors. When grown on -glucose, the main metabolic end products were propionic and acetic acids, with a minor product being succinic acid. The major cellular fatty acids, iso-C and anteiso-C, were present at a 1 : 1 molar ratio. The major menaquinone was MK-11. The DNA G+C content was found to be 38.5 mol%. According to 16S rRNA gene sequence analysis strain NSB1 is a member of the family , phylum . The closest relatives of the strain were (88.2 % identity) and (87.4 % identity). On the basis of phenotypic and genotypic properties of strain NSB1 we conclude that this strain represent a novel species in a new genus within the family of for which the name gen. nov., sp. nov. is proposed. The type strain of the species is NSB1 ( = DSM 26242, = VKM B-2743).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.052126-0
2013-11-01
2024-04-20
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/63/11/4181.html?itemId=/content/journal/ijsem/10.1099/ijs.0.052126-0&mimeType=html&fmt=ahah

References

  1. Arumugam M., Raes J., Pelletier E., Le Paslier D., Yamada T., Mende D. R., Fernandes G. R., Tap J., Bruls T. & other authors ( 2011 ). Enterotypes of the human gut microbiome. . Nature 473, 174180. [View Article] [PubMed]
    [Google Scholar]
  2. Collins M. D. ( 1985 ). Analysis of isoprenoid quinones. . In Methods in Microbiology, vol. 18, pp. 329366. Edited by Gottschalk G. . New York:: Academic Press;.
    [Google Scholar]
  3. Costello E. K., Lauber C. L., Hamady M., Fierer N., Gordon J. I., Knight R. ( 2009 ). Bacterial community variation in human body habitats across space and time. . Science 326, 16941697. [View Article] [PubMed]
    [Google Scholar]
  4. Eckburg P. B., Bik E. M., Bernstein C. N., Purdom E., Dethlefsen L., Sargent M., Gill S. R., Nelson K. E., Relman D. A. ( 2005 ). Diversity of the human intestinal microbial flora. . Science 308, 16351638. [View Article] [PubMed]
    [Google Scholar]
  5. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: An approach using the bootstrap. . Evolution 39, 783791. [View Article]
    [Google Scholar]
  6. Grabowski A., Tindall B. J., Bardin V., Blanchet D., Jeanthon C. ( 2005 ). Petrimonas sulfuriphila gen. nov., sp. nov., a mesophilic fermentative bacterium isolated from a biodegraded oil reservoir. . Int J Syst Evol Microbiol 55, 11131121. [View Article] [PubMed]
    [Google Scholar]
  7. Hardham J. M., King K. W., Dreier K., Wong J., Strietzel C., Eversole R. R., Sfintescu C., Evans R. T. ( 2008 ). Transfer of Bacteroides splanchnicus to Odoribacter gen. nov. as Odoribacter splanchnicus comb. nov., and description of Odoribacter denticanis sp. nov., isolated from the crevicular spaces of canine periodontitis patients. . Int J Syst Evol Microbiol 58, 103109. [View Article] [PubMed]
    [Google Scholar]
  8. Hofstad T., Olsen I., Eribe E. R., Falsen E., Collins M. D., Lawson P. A. ( 2000 ). Dysgonomonas gen. nov. to accommodate Dysgonomonas gadei sp. nov., an organism isolated from a human gall bladder, and Dysgonomonas capnocytophagoides (formerly CDC group DF-3). . Int J Syst Evol Microbiol 50, 21892195. [View Article] [PubMed]
    [Google Scholar]
  9. Holdeman L. V., Cato E. P., Moore W. E. C. ( 1977 ). Anaerobe Laboratory Manual, , 4th edn.. Blacksburg, VA:: Virginia Polytechnic Institute and State University;.
    [Google Scholar]
  10. Jabari L., Gannoun H., Cayol J. L., Hedi A., Sakamoto M., Falsen E., Ohkuma M., Hamdi M., Fauque G. & other authors ( 2012 ). Macellibacteroides fermentans gen. nov., sp. nov., a member of the family Porphyromonadaceae isolated from an upflow anaerobic filter treating abattoir wastewaters. . Int J Syst Evol Microbiol 62, 25222527. [View Article] [PubMed]
    [Google Scholar]
  11. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111120. [View Article] [PubMed]
    [Google Scholar]
  12. Kulagina E. V., Efimov B. A., Maximov P. Y., Kafarskaia L. I., Chaplin A. V., Shkoporov A. N. ( 2012 ). Species composition of Bacteroidales order bacteria in the feces of healthy people of various ages. . Biosci Biotechnol Biochem 76, 169171. [View Article] [PubMed]
    [Google Scholar]
  13. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. & other authors ( 2007 ). clustal w and clustal_x version 2.0. . Bioinformatics 23, 29472948. [View Article] [PubMed]
    [Google Scholar]
  14. Ley R. E., Turnbaugh P. J., Klein S., Gordon J. I. ( 2006 ). Microbial ecology: human gut microbes associated with obesity. . Nature 444, 10221023. [View Article] [PubMed]
    [Google Scholar]
  15. Li E., Hamm C. M., Gulati A. S., Sartor R. B., Chen H., Wu X., Zhang T., Rohlf F. J., Zhu W. & other authors ( 2012 ). Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition. . PLoS ONE 7, e26284. [View Article] [PubMed]
    [Google Scholar]
  16. Morotomi M., Nagai F., Sakon H., Tanaka R. ( 2008 ). Dialister succinatiphilus sp. nov. and Barnesiella intestinihominis sp. nov., isolated from human faeces. . Int J Syst Evol Microbiol 58, 27162720. [View Article] [PubMed]
    [Google Scholar]
  17. O’Hara A. M., Shanahan F. ( 2006 ). The gut flora as a forgotten organ. . EMBO Rep 7, 688693. [View Article] [PubMed]
    [Google Scholar]
  18. Rautio M., Eerola E., Väisänen-Tunkelrott M. L., Molitoris D., Lawson P., Collins M. D., Jousimies-Somer H. ( 2003 ). Reclassification of Bacteroides putredinis (Weinberg et al., 1937) in a new genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and description of Alistipes finegoldii sp. nov., from human sources. . Syst Appl Microbiol 26, 182188. [View Article] [PubMed]
    [Google Scholar]
  19. Reynolds E. S. ( 1963 ). The use of lead citrate at high pH as an electron-opaque stain in electron microscopy. . J Cell Biol 17, 208212. [View Article] [PubMed]
    [Google Scholar]
  20. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406425.[PubMed]
    [Google Scholar]
  21. Sakamoto M., Benno Y. ( 2006 ). Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov.. Int J Syst Evol Microbiol 56, 15991605. [View Article] [PubMed]
    [Google Scholar]
  22. Sakamoto M., Ohkuma M. ( 2010 ). Usefulness of the hsp60 gene for the identification and classification of Gram-negative anaerobic rods. . J Med Microbiol 59, 12931302. [View Article] [PubMed]
    [Google Scholar]
  23. Sakamoto M., Suzuki M., Umeda M., Ishikawa I., Benno Y. ( 2002 ). Reclassification of Bacteroides forsythus (Tanner et al. 1986) as Tannerella forsythensis corrig., gen. nov., comb. nov.. Int J Syst Evol Microbiol 52, 841849. [View Article] [PubMed]
    [Google Scholar]
  24. Sakamoto M., Huang Y., Umeda M., Ishikawa I., Benno Y. ( 2005 ). Prevotella multiformis sp. nov., isolated from human subgingival plaque. . Int J Syst Evol Microbiol 55, 815819. [View Article] [PubMed]
    [Google Scholar]
  25. Sakamoto M., Lan P. T., Benno Y. ( 2007 ). Barnesiella viscericola gen. nov., sp. nov., a novel member of the family Porphyromonadaceae isolated from chicken caecum. . Int J Syst Evol Microbiol 57, 342346. [View Article] [PubMed]
    [Google Scholar]
  26. Sakamoto M., Takagaki A., Matsumoto K., Kato Y., Goto K., Benno Y. ( 2009 ). Butyricimonas synergistica gen. nov., sp. nov. and Butyricimonas virosa sp. nov., butyric acid-producing bacteria in the family ‘Porphyromonadaceae’ isolated from rat faeces. . Int J Syst Evol Microbiol 59, 17481753. [View Article] [PubMed]
    [Google Scholar]
  27. Sambrook J., Russell D. W. ( 2001 ). Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY:: Cold Spring Harbor Laboratory;.
    [Google Scholar]
  28. Shcherbakova V. A., Chuvilskaya N. A., Rivkina E. M., Pecheritsyna S. A., Laurinavichius K. S., Suzina N. E., Osipov G. A., Lysenko A. M., Gilichinsky D. A., Akimenko V. K. ( 2005 ). Novel psychrophilic anaerobic spore-forming bacterium from the overcooled water brine in permafrost: description Clostridium algoriphilum sp. nov.. Extremophiles 9, 239246. [View Article] [PubMed]
    [Google Scholar]
  29. Sonoki S., Hisamatsu S., Kiuchi A. ( 1993 ). High-performance liquid chromatographic determination of DNA base composition with fluorescence detection. . Nucleic Acids Res 21, 2776. [View Article] [PubMed]
    [Google Scholar]
  30. Tamaoka J., Komagata K. ( 1984 ). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. . FEMS Microbiol Lett 25, 125128. [View Article]
    [Google Scholar]
  31. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 27312739. [View Article] [PubMed]
    [Google Scholar]
  32. Turner S., Pryer K. M., Miao V. P., Palmer J. D. ( 1999 ). Investigating deep phylogenetic relationships among cyanobacteria and plastids by small subunit rRNA sequence analysis. . J Eukaryot Microbiol 46, 327338. [View Article] [PubMed]
    [Google Scholar]
  33. Ueki A., Akasaka H., Suzuki D., Ueki K. ( 2006 ). Paludibacter propionicigenes gen. nov., sp. nov., a novel strictly anaerobic, Gram-negative, propionate-producing bacterium isolated from plant residue in irrigated rice-field soil in Japan. . Int J Syst Evol Microbiol 56, 3944. [View Article] [PubMed]
    [Google Scholar]
  34. Willems A., Collins M. D. ( 1995 ). Reclassification of Oribaculum catoniae (Moore and Moore 1994) as Porphyromonas catoniae comb. nov. and emendation of the genus Porphyromonas . . Int J Syst Bacteriol 45, 578581. [View Article] [PubMed]
    [Google Scholar]
  35. Wylie K. M., Truty R. M., Sharpton T. J., Mihindukulasuriya K. A., Zhou Y., Gao H., Sodergren E., Weinstock G. M., Pollard K. S. ( 2012 ). Novel bacterial taxa in the human microbiome. . PLoS ONE 7, e35294. [View Article] [PubMed]
    [Google Scholar]
  36. Zhao F., Bi X., Hao Y., Liao X. ( 2013 ). Induction of viable but nonculturable Escherichia coli O157:H7 by high pressure CO2 and its characteristics. . PLoS ONE 8, e62388. [View Article] [PubMed]
    [Google Scholar]
  37. Zhilina T. N., Zavarzina D. G., Panteleeva A. N., Osipov G. A., Kostrikina N. A., Tourova T. P., Zavarzin G. A. ( 2012 ). Fuchsiella alkaliacetigena gen. nov., sp. nov., an alkaliphilic, lithoautotrophic homoacetogen from a soda lake. . Int J Syst Evol Microbiol 62, 16661673. [View Article] [PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.052126-0
Loading
/content/journal/ijsem/10.1099/ijs.0.052126-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error