Caulobacter daechungensis sp. nov., a stalked bacterium isolated from a eutrophic reservoir

References

1. Abraham W.-R., Strömpl C., Meyer H., Lindholst S., Moore E. R. B., Christ R., Vancanneyt M., Tindall B. J., Bennasar A. & other authors ( 1999 ). Phylogeny and polyphasic taxonomy of Caulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter . . Int J Syst Bacteriol 49, 1053–1073. [View Article] [PubMed]
   [Google Scholar]
2. Abraham W.-R., Macedo A. J., Lünsdorf H., Fischer R., Pawelczyk S., Smit J., Vancanneyt M. ( 2008 ). Phylogeny by a polyphasic approach of the order Caulobacterales, proposal of Caulobacter mirabilis sp. nov., Phenylobacterium haematophilum sp. nov. and Phenylobacterium conjunctum sp. nov., and emendation of the genus Phenylobacterium . . Int J Syst Evol Microbiol 58, 1939–1949. [View Article] [PubMed]
   [Google Scholar]
3. Bates R. G., Bower V. E. ( 1956 ). Alkaline solutions for pH control. . Anal Chem 28, 1322–1324. [View Article]
   [Google Scholar]
4. Buck J. D. ( 1982 ). Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. . Appl Environ Microbiol 44, 992–993. [PubMed]
   [Google Scholar]
5. Chen H., Jogler M., Rohde M., Klenk H. P., Busse H.-J., Tindall B.-J., Spröer C., Overmann J. ( 2012 ). Reclassification and emended description of Caulobacter leidyi as Sphingomonas leidyi comb. nov., and emendation of the genus Sphingomonas . . Int J Syst Evol Microbiol 62, 2835–2843. [View Article] [PubMed]
   [Google Scholar]
6. Ezaki T., Hashimoto Y., Yabuuchi E. ( 1989 ). Fluorometric deoxyribonucleic acid- deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. . Int J Syst Bacteriol 39, 224–229. [View Article]
   [Google Scholar]
7. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368–376. [View Article] [PubMed]
   [Google Scholar]
8. Felsenstein J. ( 1985 ). Confidence limit on phylogenies: an approach using the bootstrap. . Evolution 39, 783–791. [View Article]
   [Google Scholar]
9. Fitch W. M. ( 1971 ). Toward defining the course of evolution: minimum change for a specific tree topology. . Syst Zool 20, 406–416. [View Article]
   [Google Scholar]
10. Gomori G. ( 1955 ). Preparation of buffers for use in enzyme studies. . Methods Enzymol 1, 138–146. [View Article]
    [Google Scholar]
11. Hall T. A. ( 1999 ). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. . Nucl Acids Symp Ser 41, 95–98.
    [Google Scholar]
12. Henrici A. T., Johnson D. E. ( 1935 ). Studies on fresh water bacteria. II. Stalked bacteria, a new order of schizomycetes. . J Bacteriol 30, 61–93. [PubMed]
    [Google Scholar]
13. Jin L., Huy H., Lee H.-G., Ko S.-R., Ahn C.-Y., Oh H.-M. ( 2013 ). Belnapia soli sp. nov., a novel proteobacterium isolated from grass soil. . Int J Syst Evol Microbiol 63, 1955–1959. [View Article] [PubMed]
    [Google Scholar]
14. Kim O.-S., Cho Y.-J., Lee K., Yoon S.-H., Kim M., Na H., Park S.-C., Jeon Y. S., Lee J.-H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716–721. [View Article] [PubMed]
    [Google Scholar]
15. Komagata K., Suzuki K. ( 1987 ). Lipid and cell wall analysis in bacterial systematics. . Methods Microbiol 19, 161–207. [View Article]
    [Google Scholar]
16. Kumar S., Nei M., Dudley J., Tamura K. ( 2008 ). mega: a biologist-centric software for evolutionary analysis of DNA and protein sequences. . Brief Bioinform 9, 299–306. [View Article] [PubMed]
    [Google Scholar]
17. Liu Q.-M., Ten L. N., Im W.-T., Lee S.-T., Yoon M.-H. ( 2010 ). Caulobacter ginsengisoli sp. nov., a novel stalked bacterium isolated from ginseng cultivating soil. . J Microbiol Biotechnol 20, 15–20. [PubMed]
    [Google Scholar]
18. Poindexter J. S. ( 1964 ). Biological properties and classification of the Caulobacter group. . Bacteriol Rev 28, 231–295. [PubMed]
    [Google Scholar]
19. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425. [PubMed]
    [Google Scholar]
20. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
21. Stahl D. A., Key R., Flesher B., Smit J. ( 1992 ). The phylogeny of marine and freshwater caulobacters reflects their habitat. . J Bacteriol 174, 2193–2198. [PubMed]
    [Google Scholar]
22. Staley J. T. ( 1968 ). Prosthecomicrobium and Ancalomicrobium: new prosthecate freshwater bacteria. . J Bacteriol 95, 1921–1942. [PubMed]
    [Google Scholar]
23. Tamaoka J., Komagata K. ( 1984 ). Determination of DNA base composition by reverse-phased high-performance liquid chromatography. . FEMS Microbiol Lett 25, 125–128. [View Article]
    [Google Scholar]
24. Tarrand J. J., Gröschel D. H. M. ( 1982 ). Rapid, modified oxidase test for oxidase-variable bacterial isolates. . J Clin Microbiol 16, 772–774. [PubMed]
    [Google Scholar]
25. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. ( 1997 ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25, 4876–4882. [View Article] [PubMed]
    [Google Scholar]
26. Urakami T., Oyanagi H., Araki H., Suzuki K. I., Komagata K. ( 1990 ). Recharacterization and emended description of the genus Mycoplana and description of two new species, Mycoplana ramosa and Mycoplana segnis . . Int J Syst Bacteriol 40, 434–442. [View Article]
    [Google Scholar]
27. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. & other authors ( 1987 ). Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics. . Int J Syst Bacteriol 37, 463–464. [View Article]
    [Google Scholar]