1887

Abstract

A Gram-staining-negative, aerobic, non-flagellated, non-gliding and rod-shaped bacterial strain, HD-3, was isolated from a tidal flat sediment of Hwangdo in the Yellow Sea, South Korea. Strain HD-3 grew optimally at pH 7.0–8.0, at 30 °C and in the presence of 2–3 % (w/v) NaCl. Phylogenetic trees based on 16S rRNA gene sequences revealed that strain HD-3 joined the cluster comprising the type strains of and . Strain HD-3 exhibited 16S rRNA gene sequence similarity values of 93.8 % to each of the type strains of and . Strain HD-3 contained MK-6 as the only menaquinone and iso-C, iso-C G, iso-C 3-OH and iso-C 3-OH as the major fatty acids. The polar lipid profile of strain HD-3, which contained phosphatidylethanolamine and one unidentified lipid as major components and one unidentified phospholipid as a significant component, differed slightly from those of the type strains of and . The DNA G+C content of strain HD-3 was 42.3 mol%. Differential phenotypic and chemotaxonomic properties and phylogenetic data of strain HD-3 demonstrated that this strain is distinguishable from and . On the basis of the data presented, strain HD-3 is considered to represent a novel genus and species, for which the name gen. nov., sp. nov. is proposed. The type strain is HD-3 ( = KCTC 32177 = CCUG 63246).

Funding
This study was supported by the:
  • National Institute of Biological Resources (NIBR)
  • Ministry of Education, Science and Technology (MEST)
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.048744-0
2013-09-01
2024-12-12
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/63/9/3186.html?itemId=/content/journal/ijsem/10.1099/ijs.0.048744-0&mimeType=html&fmt=ahah

References

  1. Bae S. S., Kwon K. K., Yang S. H., Lee H. S., Kim S. J., Lee J. H. ( 2007 ). Flagellimonas eckloniae gen. nov., sp. nov., a mesophilic marine bacterium of the family Flavobacteriaceae, isolated from the rhizosphere of Ecklonia kurome. . Int J Syst Evol Microbiol 57, 10501054. [View Article] [PubMed]
    [Google Scholar]
  2. Barrow G. I., Feltham R. K. A. (editors) ( 1993 ). Cowan and Steel’s Manual for the Identification of Medical Bacteria, , 3rd edn.. Cambridge:: Cambridge University Press;. [View Article]
    [Google Scholar]
  3. Baumann P., Baumann L. ( 1981 ). The marine Gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas, and Alcaligenes . . In The Prokaryotes, vol. 1, pp. 13021331. Edited by Starr M. P., Stolp H., Trüper H. G., Balows A., Schlegel H. G. . Berlin:: Springer;.
    [Google Scholar]
  4. Bernardet J.-F. ( 2011 ). Family I. Flavobacteriaceae Reichenbach 1992. . In Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 4, pp. 106111. Edited by Krieg N. R., Ludwig W., Whitman W. B., Hedlund B. P., Paster B. J., Staley J. T., Ward N., Brown D., Parte A. . New York:: Springer;.
    [Google Scholar]
  5. Bernardet J.-F., Segers P., Vancanneyt M., Berthe F., Kersters K., Vandamme P. ( 1996 ). Cutting a Gordian knot: emended classification and description of the genus Flavobacterium, emended description of the family Flavobacteriaceae, and proposal of Flavobacterium hydatis nom. nov. (basonym, Cytophaga aquatilis Strohl & Tait 1978). . Int J Syst Bacteriol 46, 128148. [View Article]
    [Google Scholar]
  6. Bernardet J.-F., Nakagawa Y., Holmes B. ( 2002 ). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. . Int J Syst Evol Microbiol 52, 10491070. [View Article] [PubMed]
    [Google Scholar]
  7. Bowman J. P. ( 2000 ). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. . Int J Syst Evol Microbiol 50, 18611868.[PubMed]
    [Google Scholar]
  8. Bruns A., Rohde M., Berthe-Corti L. ( 2001 ). Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. . Int J Syst Evol Microbiol 51, 19972006. [View Article] [PubMed]
    [Google Scholar]
  9. Cohen-Bazire G., Sistrom W. R., Stanier R. Y. ( 1957 ). Kinetic studies of pigment synthesis by nonsulfur purple bacteria. . J Cell Comp Physiol 49, 2568. [View Article]
    [Google Scholar]
  10. Khan S. T., Nakagawa Y., Harayama S. ( 2008 ). Fulvibacter tottoriensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from marine sediment. . Int J Syst Evol Microbiol 58, 16701674. [View Article] [PubMed]
    [Google Scholar]
  11. Kim O.-S., Cho Y.-J., Lee K., Yoon S.-H., Kim M., Na H., Park S.-C., Jeon Y. S., Lee J.-H. & other authors ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716721. [View Article] [PubMed]
    [Google Scholar]
  12. Komagata K., Suzuki K. ( 1988 ). Lipid and cell-wall analysis in bacterial systematics. . Methods Microbiol 19, 161207. [View Article]
    [Google Scholar]
  13. Lányí B. ( 1988 ). Classical and rapid identification methods for medically important bacteria. . Methods Microbiol 19, 167. [View Article]
    [Google Scholar]
  14. Lee D. H., Kahng H.-Y., Lee Y. S., Jung J. S., Kim J. M., Chung B. S., Park S. K., Jeon C. O. ( 2009 ). Jejuia pallidilutea gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from seawater. . Int J Syst Evol Microbiol 59, 21482152. [View Article] [PubMed]
    [Google Scholar]
  15. Leifson E. ( 1963 ). Determination of carbohydrate metabolism of marine bacteria. . J Bacteriol 85, 11831184.[PubMed]
    [Google Scholar]
  16. Macián M. C., Pujalte M. J., Márquez M. C., Ludwig W., Ventosa A., Garay E., Schleifer K. H. ( 2002 ). Gelidibacter mesophilus sp. nov., a novel marine bacterium in the family Flavobacteriaceae. . Int J Syst Evol Microbiol 52, 13251329. [View Article] [PubMed]
    [Google Scholar]
  17. Minnikin D. E., Patel P. V., Alshamaony L., Goodfellow M. ( 1977 ). Polar lipid composition in the classification of Nocardia and related bacteria. . Int J Syst Bacteriol 27, 104117. [View Article]
    [Google Scholar]
  18. Minnikin D. E., O’Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H. ( 1984 ). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. . J Microbiol Methods 2, 233241. [View Article]
    [Google Scholar]
  19. Nedashkovskaya O. I., Kim S. B., Lysenko A. M., Frolova G. M., Mikhailov V. V., Bae K. S. ( 2005 ). Bizionia paragorgiae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from the soft coral Paragorgia arborea. . Int J Syst Evol Microbiol 55, 375378. [View Article] [PubMed]
    [Google Scholar]
  20. Reichenbach H. ( 1992 ). The order Cytophagales . . In The Prokaryotes , , 2nd edn., vol. 4, pp. 36313675. Edited by Balows A., Trüper H. G., Dworkin M., Harder W., Schleifer K. H. . New York:: Springer;. [CrossRef]
    [Google Scholar]
  21. Romanenko L. A., Uchino M., Frolova G. M., Mikhailov V. V. ( 2007 ). Marixanthomonas ophiurae gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from a deep-sea brittle star. . Int J Syst Evol Microbiol 57, 457462. [View Article] [PubMed]
    [Google Scholar]
  22. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. . Newark, DE:: MIDI Inc.;
    [Google Scholar]
  23. Staley J. T. ( 1968 ). Prosthecomicrobium and Ancalomicrobium: new prosthecate freshwater bacteria. . J Bacteriol 95, 19211942.[PubMed]
    [Google Scholar]
  24. Tamaoka J., Komagata K. ( 1984 ). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. . FEMS Microbiol Lett 25, 125128. [View Article]
    [Google Scholar]
  25. Yoon J.-H., Kim H., Kim S.-B., Kim H.-J., Kim W. Y., Lee S. T., Goodfellow M., Park Y.-H. ( 1996 ). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. . Int J Syst Bacteriol 46, 502505. [View Article]
    [Google Scholar]
  26. Yoon J.-H., Lee S. T., Park Y.-H. ( 1998 ). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. . Int J Syst Bacteriol 48, 187194. [View Article] [PubMed]
    [Google Scholar]
  27. Yoon J.-H., Kang K. H., Park Y.-H. ( 2003 ). Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. . Int J Syst Evol Microbiol 53, 449454. [View Article] [PubMed]
    [Google Scholar]
  28. Yoon B.-J., Lee D.-H., Kang B.-J., Kahng H.-Y., Oh Y.-S., Sohn J.-H., Choi E.-S., Oh D.-C. ( 2010 ). Hyunsoonleella jejuensis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from seawater. . Int J Syst Evol Microbiol 60, 382386. [View Article] [PubMed]
    [Google Scholar]
/content/journal/ijsem/10.1099/ijs.0.048744-0
Loading
/content/journal/ijsem/10.1099/ijs.0.048744-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error