1887

Abstract

Strain VN07A0015 was isolated from soil collected on Cat Ba Island, Vietnam. The taxonomic position of strain VN07A0015 was near M24DS4 (98.5 % 16S rRNA gene sequence similarity) and NBRC 100760 (95.6 %), and it clustered within them; however, this cluster was distant from the type strains of other species of the genus . The aerial mycelia of strain VN07A0015 were greyish and formed imperfect spiral spore chains (retinaculiaperti type) with smooth-surfaced spores. The morphological features of strain VN07A0015 were different from those of the type strains of and . The chemotaxonomic characteristics of strain VN07A0015 were typical for all members of the genus , which possessed -type diaminopimelic acid, menaquinone MK-9(H, H) and the major fatty acids iso-C and iso-C. DNA–DNA relatedness between strain VN07A0015 and NBRC 106164 was less than 30 %. In addition, some physiological and biochemical traits differed from those of . Therefore, we propose that strain VN07A0015 be classified in the genus as a representative of sp. nov. (type strain VN07A0015 = VTCC-A-1889 = NBRC 107860).

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2014-06-01
2019-10-23
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References

  1. Felsenstein J.. ( 1981;). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17:, 368–376. [CrossRef][PubMed]
    [Google Scholar]
  2. Felsenstein J.. ( 1985;). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39:, 783–791. [CrossRef]
    [Google Scholar]
  3. Goodfellow M., Fiedler H. P.. ( 2010;). A guide to successful bioprospecting: informed by actinobacterial systematics. . Antonie van Leeuwenhoek 98:, 119–142. [CrossRef][PubMed]
    [Google Scholar]
  4. Hardisson C., Manzanal M. B.. ( 1976;). Ultrastructural studies of sporulation in Streptomyces. . J Bacteriol 127:, 1443–1454.[PubMed]
    [Google Scholar]
  5. Hayakawa M., Nonomura H.. ( 1987;). Humic acid-vitamin agar, a new medium for selective isolation of soil actinomycetes. . J Ferment Technol 65:, 501–509. [CrossRef]
    [Google Scholar]
  6. Hayakawa M., Nonomura H.. ( 1989;). A new method for the intensive isolation of actinomycetes from soil. . Actinomycetologica 3:, 95–104. [CrossRef]
    [Google Scholar]
  7. Kluge A. G., Farris F. S.. ( 1969;). Quantitative phyletics and the evolution of anurans. . Syst Zool 18:, 1–32. [CrossRef]
    [Google Scholar]
  8. Minnikin D. E., O’Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H.. ( 1984;). An integrated producer for the extraction of bacterial isoprenoid quinones and polar lipids. . J Microbiol Methods 2:, 233–241. [CrossRef]
    [Google Scholar]
  9. Pridham T. G., Hesseltine C. W., Benedict R. G.. ( 1958;). A guide for the classification of streptomycetes according to selected groups; placement of strains in morphological sections. . Appl Microbiol 6:, 52–79.[PubMed]
    [Google Scholar]
  10. Saitou N., Nei M.. ( 1987;). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4:, 406–425.[PubMed]
    [Google Scholar]
  11. Sakiyama Y., Thao N. K., Giang N. M., Miyadoh S., Hop D. V., Ando K.. ( 2009;). Kineosporia babensis sp. nov., isolated from plant litter in Vietnam. . Int J Syst Evol Microbiol 59:, 550–554. [CrossRef][PubMed]
    [Google Scholar]
  12. Sasser M.. ( 1990;). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. . Newark, DE:: MIDI Inc;.
  13. Shirling E. B., Gottlieb D.. ( 1966;). Methods for characterization of Streptomyces species. . Int J Syst Bacteriol 16:, 313–340. [CrossRef]
    [Google Scholar]
  14. Staneck J. L., Roberts G. D.. ( 1974;). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. . Appl Microbiol 28:, 226–231.[PubMed]
    [Google Scholar]
  15. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S.. ( 2011;). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28:, 2731–2739. [CrossRef][PubMed]
    [Google Scholar]
  16. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G.. ( 1997;). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25:, 4876–4882. [CrossRef][PubMed]
    [Google Scholar]
  17. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E.. & other authors ( 1987;). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37:, 463–464. [CrossRef]
    [Google Scholar]
  18. Wildermuth H., Hopwood D. A.. ( 1970;). Septation during sporulation in Streptomyces coelicolor. . J Gen Microbiol 60:, 51–59. [CrossRef][PubMed]
    [Google Scholar]
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