Multilocus sequence analysis and 16S rRNA gene sequencing reveal that Yersinia frederiksenii genospecies 2 is Yersinia massiliensis

References

1. Christensen H., Kuhnert P., Busse H. J., Frederiksen W. C., Bisgaard M. ( 2007 ). Proposed minimal standards for the description of genera, species and subspecies of the Pasteurellaceae . . Int J Syst Evol Microbiol 57, 166–178. [View Article] [PubMed]
   [Google Scholar]
2. Dauga C. ( 2002 ). Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies. . Int J Syst Evol Microbiol 52, 531–547.[PubMed]
   [Google Scholar]
3. Delmas J., Breysse F., Devulder G., Flandrois J. P., Chomarat M. ( 2006 ). Rapid identification of Enterobacteriaceae by sequencing DNA gyrase subunit B encoding gene. . Diagn Microbiol Infect Dis 55, 263–268. [View Article] [PubMed]
   [Google Scholar]
4. Demarta A., De Respinis S., Dolina M., Peduzzi R. ( 2004 ). Molecular typing of Yersinia frederiksenii strains by means of 16S rDNA and gyrB genes sequence analyses. . FEMS Microbiol Lett 238, 423–428.[PubMed]
   [Google Scholar]
5. Dolina M., Peduzzi R. ( 1993 ). Population genetics of human, animal, and environmental Yersinia species. . Appl Environ Microbiol 2, 442–450.
   [Google Scholar]
6. Fox G. E., Wisotzkey J. D., Jurtshuk P. Jr ( 1992 ). How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. . Int J Syst Bacteriol 42, 166–170. [View Article] [PubMed]
   [Google Scholar]
7. Gevers D., Cohan F. M., Lawrence J. G., Spratt B. G., Coenye T., Feil E. J., Stackebrandt E., Van de Peer Y., Vandamme P. & other authors ( 2005 ). Opinion: re-evaluating prokaryotic species. . Nat Rev Microbiol 3, 733–739. [View Article] [PubMed]
   [Google Scholar]
8. Ibrahim A., Goebel B. M., Liesack W., Griffiths M., Stackebrandt E. ( 1993 ). The phylogeny of the genus Yersinia based on 16S rDNA sequences. . FEMS Microbiol Lett 114, 173–177. [View Article] [PubMed]
   [Google Scholar]
9. Ibrahim A., Liesack W., Steigerwalt A. G., Brenner D. J., Stackebrandt E., Robins-Browne R. M. ( 1997 ). A cluster of atypical Yersinia strains with a distinctive 16S rRNA signature. . FEMS Microbiol Lett 146, 73–78. [View Article] [PubMed]
   [Google Scholar]
10. Iteman I., Guiyoule A., Carniel E. ( 1996 ). Comparison of three molecular methods for typing and subtyping pathogenic Yersinia enterocolitica strains. . J Med Microbiol 45, 48–56. [View Article] [PubMed]
    [Google Scholar]
11. Kotetishvili M., Kreger A., Wauters G., Morris J. G. Jr, Sulakvelidze A., Stine O. C. ( 2005 ). Multilocus sequence typing for studying genetic relationships among Yersinia species. . J Clin Microbiol 43, 2674–2684. [View Article] [PubMed]
    [Google Scholar]
12. Labeda D. P. ( 2011 ). Multilocus sequence analysis of phytopathogenic species of the genus Streptomyces . . Int J Syst Evol Microbiol 61, 2525–2531. [View Article] [PubMed]
    [Google Scholar]
13. Martens M., Dawyndt P., Coopman R., Gillis M., De Vos P., Willems A. ( 2008 ). Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium). . Int J Syst Evol Microbiol 58, 200–214. [View Article] [PubMed]
    [Google Scholar]
14. Merhej V., Adékambi T., Pagnier I., Raoult D., Drancourt M. ( 2008 ). Yersinia massiliensis sp. nov., isolated from fresh water. . Int J Syst Evol Microbiol 58, 779–784. [View Article] [PubMed]
    [Google Scholar]
15. Mignard S., Flandrois J. P. ( 2006 ). 16S rRNA sequencing in routine bacterial identification: a 30-month experiment. . J Microbiol Methods 67, 574–581. [View Article] [PubMed]
    [Google Scholar]
16. Ramos P. L., Moreira-Filho C. A., Van Trappen S., Swings J., De Vos P., Barbosa H. R., Thompson C. C., Vasconcelos A. T., Thompson F. L. ( 2011 ). An MLSA-based online scheme for the rapid identification of Stenotrophomonas isolates. . Mem Inst Oswaldo Cruz 106, 394–399.[PubMed] [CrossRef]
    [Google Scholar]
17. Souza R. A., Pitondo-Silva A., Falcão D. P., Falcão J. P. ( 2010 ). Evaluation of four molecular typing methodologies as tools for determining taxonomy relations and for identifying species among Yersinia isolates. . J Microbiol Methods 82, 141–150. [View Article] [PubMed]
    [Google Scholar]
18. Souza R. A., Falcão D. P., Falcão J. P. ( 2011 ). Emended description of Yersinia massiliensis . . Int J Syst Evol Microbiol 61, 1094–1097. [View Article] [PubMed]
    [Google Scholar]
19. Stackebrandt E., Ebers J. ( 2006 ). Taxonomic parameters revisited: tarnished gold standards. . Microbiol Today 33, 152–155.
    [Google Scholar]
20. Stackebrandt E., Goebel B. ( 1994 ). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. . Int J Syst Microbiol 44, 846–849.
    [Google Scholar]
21. Stackebrandt E., Frederiksen W., Garrity G. M., Grimont P. A. D., Kämpfer P., Maiden M. C. J., Nesme X., Rosselló-Mora R., Swings J. & other authors ( 2002 ). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. . Int J Syst Evol Microbiol 52, 1043–1047. [View Article] [PubMed]
    [Google Scholar]
22. Thompson F. L., Gevers D., Thompson C. C., Dawyndt P., Naser S., Hoste B., Munn C. B., Swings J. ( 2005 ). Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. . Appl Environ Microbiol 71, 5107–5115. [View Article] [PubMed]
    [Google Scholar]
23. Ursing J., Aleksić S. ( 1995 ). Yersinia frederiksenii, a genotypically heterogeneous species with few differential characteristics. . Contrib Microbiol Immunol 13, 112–116.[PubMed]
    [Google Scholar]
24. Ursing J., Brennert D. J., Bercovier H., Fanning G. R., Steigerwalt A. G., Brault J., Mollaret H. H. ( 1980 ). Yersinia frederiksenii: a new species of Enterobacteriaceae composed of rhamnose positive strains (formerly called atypical Yersinia enterocolitica or Yersinia enterocolitica like). . Curr Microbiol 4, 213–217. [View Article]
    [Google Scholar]
25. Wayne L., Brenner D., Colwell R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. & other authors ( 1987 ). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37, 463–464. [View Article]
    [Google Scholar]
26. Woo P. C., Lau S. K., Teng J. L., Tse H., Yuen K. Y. ( 2008 ). Then and now: use of 16S rDNA gene sequencing for bacterial identification and discovery of novel bacteria in clinical microbiology laboratories. . Clin Microbiol Infect 14, 908–934. [View Article] [PubMed]
    [Google Scholar]
27. Young J. M., Park D. C., Shearman H. M., Fargier E. ( 2008 ). A multilocus sequence analysis of the genus Xanthomonas . . Syst Appl Microbiol 31, 366–377. [View Article] [PubMed]
    [Google Scholar]
28. Young J., Wilkie J., Park D., Watson D. ( 2010 ). New Zealand strains of plant pathogenic bacteria classified by multi-locus sequence analysis; proposal of Xanthomonas dyei sp. nov.. Plant Pathol 59, 270–281. [View Article]
    [Google Scholar]
29. Zeigler D. R. ( 2003 ). Gene sequences useful for predicting relatedness of whole genomes in bacteria. . Int J Syst Evol Microbiol 53, 1893–1900. [View Article] [PubMed]
    [Google Scholar]