Iodobacter arcticus sp. nov., a psychrotolerant bacterium isolated from meltwater stream sediment of an Arctic glacier

References

1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. ( 1990 ). Basic local alignment search tool. . J Mol Biol 215, 403–410.[PubMed] [CrossRef]
   [Google Scholar]
2. Collins M. D., Pirouz T., Goodfellow M., Minnikin D. E. ( 1977 ). Distribution of menaquinones in actinomycetes and corynebacteria. . J Gen Microbiol 100, 221–230. [View Article] [PubMed]
   [Google Scholar]
3. Felsenstein J. ( 1993 ). phylip (phylogeny inference package), version 3.5.1. . Department of Genome Sciences, University of Washington;, Seattle, USA:.
   [Google Scholar]
4. Groth I., Schumann P., Rainey F. A., Martin K., Schuetze B., Augsten K. ( 1997 ). Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. . Int J Syst Bacteriol 47, 1129–1133. [View Article] [PubMed]
   [Google Scholar]
5. Guindon S., Lethiec F., Duroux P., Gascuel O. ( 2005 ). phyml online–a web server for fast maximum likelihood-based phylogenetic inference. . Nucleic Acids Res 33 (Web Server issue), W557–W559. [View Article] [PubMed]
   [Google Scholar]
6. Kim O. S., Cho Y. J., Lee K., Yoon S. H., Kim M., Na H., Park S. C., Jeon Y. S., Lee J. H., Yi H., Won S., Chun J. ( 2012 ). Introducing EzTaxon-e: a prokaryotic 16S rRNA Gene sequence database with phylotypes that represent uncultured species. . Int J Syst Evol Microbiol 62, 716–721. [View Article] [PubMed]
   [Google Scholar]
7. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111–120. [View Article] [PubMed]
   [Google Scholar]
8. Komagata K., Suzuki K. ( 1987 ). Lipid and cell wall analysis in bacterial_systematictics. . Methods Microbiol 19, 161–207. [View Article]
   [Google Scholar]
9. Lane D. J. ( 1991 ). 16S/23S rRNA sequencing. . In Nucleic Acid Techniques in Bacterial Systematics, pp. 115–175. Edited by Stackebrandt E., Goodfellow M. . Chichester:: Wiley;.
   [Google Scholar]
10. Lányί B. ( 1987 ). Classical and rapid identification methods for medically important bacteria. . Methods Microbiol 19, 1–67. [View Article]
    [Google Scholar]
11. Logan N. A. ( 1989 ). Numerical taxonomy of violet-pigmented, gram-negative bacteria and description of Iodobacter fluviatile gen. nov., comb. nov.. Int J Syst Bacteriol 39, 450–456. [View Article]
    [Google Scholar]
12. Marmur J. ( 1961 ). A procedure for the isolation of deoxyribonucleic acid from microorganisms. . J Mol Biol 3, 208–218. [View Article]
    [Google Scholar]
13. Reddy G. S. N., Aggarwal R. K., Matsumoto G. I., Shivaji S. ( 2000 ). Arthrobacter flavus sp. nov., a psychrophilic bacterium isolated from a pond in McMurdo Dry Valley, Antarctica. . Int J Syst Evol Microbiol 50, 1553–1561. [View Article] [PubMed]
    [Google Scholar]
14. Ryall C., Moss M. O. ( 1975 ). Selective media for the enumeration of Chromobacterium spp. in soil and water. . J Appl Bacteriol 38, 53–59. [View Article] [PubMed]
    [Google Scholar]
15. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
16. Shivaji S., Ray M. K., Shyamala Rao N., Saisree L., Jagannadham M. V., Seshu Kumar G., Reddy G. S. N., Bhargava P. M. ( 1992 ). Sphingobacterium antarcticus sp. nov. a psychrotrophic bacterium from the soils of Schirmacher Oasis, Antarctica. . Int J Syst Bacteriol 42, 102–106. [View Article]
    [Google Scholar]
17. Shivaji S., Vijaya Bhanu N., Aggarwal R. K. ( 2000 ). Identification of Yersinia pestis as the causative organism of plague in India as determined by 16S rDNA sequencing and RAPD-based genomic fingerprinting. . FEMS Microbiol Lett 189, 247–252. [View Article] [PubMed]
    [Google Scholar]
18. Sly L. I., Blackall L. L., Kraat P. C., Tian-Shen T., Sangkhobol V. ( 1986 ). The use of second derivative plots for the determination of mol% guanine plus cytosine of DNA by the thermal denaturation method. . J Microbiol Methods 5, 139–156. [View Article]
    [Google Scholar]
19. Smibert R. M., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607–654. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
20. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. ( 1997 ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25, 4876–4882. [View Article] [PubMed]
    [Google Scholar]
21. Tourova T. P., Antonov A. S. ( 1987 ). Identification of microorganisms by rapid DNA-DNA hybridisation. . Methods Microbiol 19, 333–355. [View Article]
    [Google Scholar]
22. Vandamme P., Pot B., Gillis M., de Vos P., Kersters K., Swings J. ( 1996 ). Polyphasic taxonomy, a consensus approach to bacterial systematics. . Microbiol Rev 60, 407–438.[PubMed]
    [Google Scholar]
23. Vardhan Reddy P. V., Shiva Nageswara Rao S. S., Pratibha M. S., Sailaja B., Kavya B., Manorama R. R., Singh S. M., Radha Srinivas T. N., Shivaji S. ( 2009 ). Bacterial diversity and bioprospecting for cold-active enzymes from culturable bacteria associated with sediment from a melt water stream of Midtre Lovenbreen glacier, an Arctic glacier. . Res Microbiol 160, 538–546. [View Article] [PubMed]
    [Google Scholar]
24. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. & other authors ( 1987 ). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37, 463–464. [View Article]
    [Google Scholar]
25. Wynn-Williams D. D. ( 1983 ). Distribution and characteristics of Chromobacterium in the maritime and sub-Antarctic. . Polar Biol 2, 101–108. [View Article]
    [Google Scholar]