1887

Abstract

Bacterial strains CNX-216 and CNU-914 were isolated from marine sediment samples collected from Palmyra Atoll and off Catalina Island, respectively. Both strains were Gram-negative and aerobic and produce deep-orange to pink colonies and alkaloid secondary metabolites. Cells of strain CNX-216 were short, non-motile rods, whereas cells of strain CNU-914 were short, curved rods with gliding motility. The DNA G+C contents of CNX-216 and CNU-914 were respectively 57.7 and 44.4 mol%. Strains CNX-216 and CNU-914 contained MK-7 as the predominant menaquinone and iso-C and Cω5 as the major fatty acids. Phylogenetic analyses revealed that both strains belong to the order in the phylum . Strain CNX-216 exhibited low 16S rRNA gene sequence identity (87.1 %) to the nearest type strain, 311, and formed a well-supported lineage that is outside all currently described families in the order . Strain CNU-914 shared 97.6 % 16S rRNA gene sequence identity with ‘’ N5EA6-3A2B and, together with ‘’ N5DB8-4 and four uncharacterized marine bacteria isolated as part of this study, formed a lineage that is clearly distinguished from other families in the order . Based on our polyphasic taxonomic characterization, we propose that strains CNX-216 and CNU-914 represent novel genera and species, for which we propose the names gen. nov., sp. nov. (type strain CNX-216  = DSM 25187  = KCCM 90102) and gen. nov., sp. nov. (type strain CNU-914  = DSM 25186  = KCCM 90101) within the new families fam. nov. and fam. nov.

Funding
This study was supported by the:
  • National Institutes of Health (Award 1R37CA044848 and 1R01GM086261)
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.043752-0
2013-04-01
2024-04-18
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/63/4/1219.html?itemId=/content/journal/ijsem/10.1099/ijs.0.043752-0&mimeType=html&fmt=ahah

References

  1. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. ( 1990 ). Basic local alignment search tool. . J Mol Biol 215, 403410.[PubMed] [CrossRef]
    [Google Scholar]
  2. Bernardet J.-F., Nakagawa Y., Holmes B. ( 2002 ). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. . Int J Syst Evol Microbiol 52, 10491070. [View Article] [PubMed]
    [Google Scholar]
  3. Bligh E. G., Dyer W. J. ( 1959 ). A rapid method of total lipid extraction and purification. . Can J Biochem Physiol 37, 911917. [View Article] [PubMed]
    [Google Scholar]
  4. Collins M. D., Jones D. ( 1981 ). A note on the separation of natural mixtures of bacterial ubiquinones using reverse-phase partition thin-layer chromatography and high performance liquid chromatography. . J Appl Bacteriol 51, 129134. [View Article] [PubMed]
    [Google Scholar]
  5. Collins S. P., Pope R. K., Scheetz R. W., Ray R. I., Wagner P. A., Little B. J. ( 1993 ). Advantages of environmental scanning electron microscopy in studies of microorganisms. . Microsc Res Tech 25, 398405. [View Article] [PubMed]
    [Google Scholar]
  6. Gerhardt P. ( 1981 ). Manual of Methods for General Bacteriology. Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  7. Giovannoni S. J., Britschgi T. B., Moyer C. L., Field K. G. ( 1990 ). Genetic diversity in Sargasso Sea bacterioplankton. . Nature 345, 6063. [View Article] [PubMed]
    [Google Scholar]
  8. Gómez-Pereira P. R., Schüler M., Fuchs B. M., Bennke C., Teeling H., Waldmann J., Richter M., Barbe V., Bataille E. et al. ( 2012 ). Genomic content of uncultured Bacteroidetes from contrasting oceanic provinces in the North Atlantic Ocean. . Environ Microbiol 14, 5266. [View Article] [PubMed]
    [Google Scholar]
  9. Gupta R. S. ( 2004 ). The phylogeny and signature sequences characteristics of Fibrobacteres, Chlorobi, and Bacteroidetes . . Crit Rev Microbiol 30, 123143. [View Article] [PubMed]
    [Google Scholar]
  10. Høvik Hansen G., Sørheim R. ( 1991 ). Improved method for phenotypical characterization of marine bacteria. . J Microbiol Methods 13, 231241. [View Article]
    [Google Scholar]
  11. Jensen P. R., Gontang E., Mafnas C., Mincer T. J., Fenical W. ( 2005 ). Culturable marine actinomycete diversity from tropical Pacific Ocean sediments. . Environ Microbiol 7, 10391048. [View Article] [PubMed]
    [Google Scholar]
  12. Kirchman D. L. ( 2002 ). The ecology of CytophagaFlavobacteria in aquatic environments. . FEMS Microbiol Ecol 39, 91100.[PubMed]
    [Google Scholar]
  13. Kovács N. ( 1956 ). Identification of Pseudomonas pyocyanea by the oxidase reaction. . Nature 178, 703. [View Article] [PubMed]
    [Google Scholar]
  14. Lau S. C. K., Tsoi M. M. Y., Li X., Plakhotnikova I., Dobretsov S., Wu M., Wong P.-K., Pawlik J. R., Qian P.-Y. ( 2006 ). Description of Fabibacter halotolerans gen. nov., sp. nov. and Roseivirga spongicola sp. nov., and reclassification of [Marinicola] seohaensis as Roseivirga seohaensis comb. nov.. Int J Syst Evol Microbiol 56, 10591065. [View Article] [PubMed]
    [Google Scholar]
  15. Liu M., Qi H., Luo X., Dai J., Peng F., Fang C. ( 2012 ). Cesiribacter roseus sp. nov., a pink-pigmented bacterium isolated from desert sand. . Int J Syst Evol Microbiol 62, 9699. [View Article] [PubMed]
    [Google Scholar]
  16. Ludwig W., Euzéby J., Whitman W. B. ( 2010 ). Taxonomic outlines of the phyla Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes . . In Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 4, pp. 2124. Edited by Krieg N. R., Staley J. T., Brown D. R., Hedlund B. P., Paster B. J., Ward N. L., Ludwig W., Whitman W. B. . New York:: Springer;. [View Article]
    [Google Scholar]
  17. Martin K., Schumann P., Rainey F. A., Schuetze B., Groth I. ( 1997 ). Janibacter limosus gen. nov., sp. nov., a new actinomycete with meso-diaminopimelic acid in the cell wall. . Int J Syst Bacteriol 47, 529534. [View Article] [PubMed]
    [Google Scholar]
  18. Nedashkovskaya O. I., Kim S. B., Lee D. H., Lysenko A. M., Shevchenko L. S., Frolova G. M., Mikhailov V. V., Lee K. H., Bae K. S. ( 2005a ). Roseivirga ehrenbergii gen. nov., sp. nov., a novel marine bacterium of the phylum ‘Bacteroidetes’, isolated from the green alga Ulva fenestrata . . Int J Syst Evol Microbiol 55, 231234. [View Article] [PubMed]
    [Google Scholar]
  19. Nedashkovskaya O. I., Kim S. B., Lysenko A. M., Park M. S., Mikhailov V. V., Bae K. S., Park H. Y. ( 2005b ). Roseivirga echinicomitans sp. nov., a novel marine bacterium isolated from the sea urchin Strongylocentrotus intermedius, and emended description of the genus Roseivirga . . Int J Syst Evol Microbiol 55, 17971800. [View Article] [PubMed]
    [Google Scholar]
  20. Okanya P. W., Mohr K. I., Gerth K., Jansen R., Müller R. ( 2011 ). Marinoquinolines A-F, pyrroloquinolines from Ohtaekwangia kribbensis (Bacteroidetes). . J Nat Prod 74, 603608. [View Article] [PubMed]
    [Google Scholar]
  21. Rappé M. S., Giovannoni S. J. ( 2003 ). The uncultured microbial majority. . Annu Rev Microbiol 57, 369394.[PubMed] [CrossRef]
    [Google Scholar]
  22. Reichenbach H. ( 2006 ). The order Cytophagales . . In The Prokaryotes, , 3rd edn., vol. 7, pp. 549590. Edited by Dworkin M., Falkow S., Rosenberg E., Schleifer K. H., Stackebrandt E. . New York:: Springer;. [View Article]
    [Google Scholar]
  23. Sangnoi Y., Sakulkeo O., Yuenyongsawad S., Kanjana-opas A., Ingkaninan K., Plubrukarn A., Suwanborirux K. ( 2008 ). Acetylcholinesterase-inhibiting activity of pyrrole derivatives from a novel marine gliding bacterium, Rapidithrix thailandica . . Mar Drugs 6, 578586. [View Article] [PubMed]
    [Google Scholar]
  24. Smibert R., Krieg N. R. ( 1994 ). Phenotypic characterization. . In Methods for General and Molecular Bacteriology, pp. 607654. Edited by Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. . Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  25. Srinivas T. N. R., Anil Kumar P., Madhu S., Sunil B., Sharma T. V. R. S., Shivaji S. ( 2011 ). Cesiribacter andamanensis gen. nov., sp. nov., isolated from a soil sample from a mud volcano. . Int J Syst Evol Microbiol 61, 15211527. [View Article] [PubMed]
    [Google Scholar]
  26. Srisukchayakul P., Suwanachart C., Sangnoi Y., Kanjana-Opas A., Hosoya S., Yokota A., Arunpairojana V. ( 2007 ). Rapidithrix thailandica gen. nov., sp. nov., a marine gliding bacterium isolated from samples collected from the Andaman sea, along the southern coastline of Thailand. . Int J Syst Evol Microbiol 57, 22752279. [View Article] [PubMed]
    [Google Scholar]
  27. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 27312739. [View Article] [PubMed]
    [Google Scholar]
  28. Thompson J. D., Higgins D. G., Gibson T. J. ( 1994 ). clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. . Nucleic Acids Res 22, 46734680. [View Article] [PubMed]
    [Google Scholar]
  29. Tian S.-P., Wang Y.-X., Hu B., Zhang X.-X., Xiao W., Chen Y., Lai Y.-H., Wen M.-L., Cui X.-L. ( 2010 ). Litoribacter ruber gen. nov., sp. nov., an alkaliphilic, halotolerant bacterium isolated from a soda lake sediment. . Int J Syst Evol Microbiol 60, 29963001. [View Article] [PubMed]
    [Google Scholar]
  30. Weon H.-Y., Kwon S.-W., Son J.-A., Kim S.-J., Kim Y.-S., Kim B.-Y., Ka J.-O. ( 2010 ). Adhaeribacter aerophilus sp. nov., Adhaeribacter aerolatus sp. nov. and Segetibacter aerophilus sp. nov., isolated from air samples. . Int J Syst Evol Microbiol 60, 24242429. [View Article] [PubMed]
    [Google Scholar]
  31. Yoon J., Oku N., Park S., Kasai H., Yokota A. ( 2011a ). Porifericola rhodea gen. nov., sp. nov., a new member of the phylum Bacteroidetes isolated by the bait-streaked agar technique. . Antonie van Leeuwenhoek 100, 145153. [View Article] [PubMed]
    [Google Scholar]
  32. Yoon J.-H., Kang S.-J., Lee S.-Y., Lee J.-S., Park S. ( 2011b ). Ohtaekwangia koreensis gen. nov., sp. nov. and Ohtaekwangia kribbensis sp. nov., isolated from marine sand, deep-branching members of the phylum Bacteroidetes . . Int J Syst Evol Microbiol 61, 10661072. [View Article] [PubMed]
    [Google Scholar]
  33. Yoon J., Oku N., Park S., Katsuta A., Kasai H. ( 2012 ). Tunicatimonas pelagia gen. nov., sp. nov., a novel representative of the family Flammeovirgaceae isolated from a sea anemone by the differential growth screening method. . Antonie van Leeuwenhoek 101, 133140. [View Article] [PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.043752-0
Loading
/content/journal/ijsem/10.1099/ijs.0.043752-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error