Weissella oryzae sp. nov., isolated from fermented rice grains

References

1. Björkroth K. J., Schillinger U., Geisen R., Weiss N., Hoste B., Holzapfel W. H., Korkeala H. J., Vandamme P. ( 2002 ). Taxonomic study of Weissella confusa and description of Weissella cibaria sp. nov., detected in food and clinical samples. . Int J Syst Evol Microbiol 52, 141–148.[PubMed]
   [Google Scholar]
2. Collins M. D., Samelis J., Metaxopoulos J., Wallbanks S. ( 1993 ). Taxonomic studies on some Leuconostoc-like organisms from fermented sausages: description of a new genus Weissella for the Leuconostoc paramesenteroides group of species. . J Appl Bacteriol 75, 595–603. [View Article] [PubMed]
   [Google Scholar]
3. De Bruyne K., Camu N., Lefebvre K., De Vuyst L., Vandamme P. ( 2008 ). Weissella ghanensis sp. nov., isolated from a Ghanaian cocoa fermentation. . Int J Syst Evol Microbiol 58, 2721–2725. [View Article] [PubMed]
   [Google Scholar]
4. De Bruyne K., Camu N., De Vuyst L., Vandamme P. ( 2010 ). Weissella fabaria sp. nov., from a Ghanaian cocoa fermentation. . Int J Syst Evol Microbiol 60, 1999–2005. [View Article] [PubMed]
   [Google Scholar]
5. Ezaki T., Hashimoto Y., Yabuuchi E. ( 1989 ). Fluorometric deoxyribonucleic acid deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. . Int J Syst Bacteriol 39, 224–229. [View Article]
   [Google Scholar]
6. Hitchener B. J., Egan A. F., Rogers P. J. ( 1982 ). Characteristics of lactic acid bacteria isolated from vacuum-packaged beef. . J Appl Bacteriol 52, 31–37. [View Article] [PubMed]
   [Google Scholar]
7. Jang J., Kim B., Lee J., Kim J., Jeong G., Han H. ( 2002 ). Identification of Weissella species by the genus-specific amplified ribosomal DNA restriction analysis. . FEMS Microbiol Lett 212, 29–34. [View Article] [PubMed]
   [Google Scholar]
8. Kimura M. ( 1980 ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. . J Mol Evol 16, 111–120. [View Article] [PubMed]
   [Google Scholar]
9. Kitahara M., Sakamoto M., Benno Y. ( 2010 ). Lactobacillus similis sp. nov., isolated from fermented cane molasses. . Int J Syst Evol Microbiol 60, 187–190. [View Article] [PubMed]
   [Google Scholar]
10. Komagata K., Suzuki K. ( 1987 ). Lipid and cell-wall analysis in bacterial systematics. . Methods Microbiol 19, 161–207. [View Article]
    [Google Scholar]
11. Larkin M. A., Blackshields G., Brown N. P., Chenna R., McGettigan P. A., McWilliam H., Valentin F., Wallace I. M., Wilm A. & other authors ( 2007 ). clustal w and clustal_x version 2.0. . Bioinformatics 23, 2947–2948. [View Article] [PubMed]
    [Google Scholar]
12. Lee J. S., Lee K. C., Ahn J. S., Mheen T. I., Pyun Y. R., Park Y. H. ( 2002 ). Weissella koreensis sp. nov., isolated from kimchi. . Int J Syst Evol Microbiol 52, 1257–1261. [View Article] [PubMed]
    [Google Scholar]
13. Magnusson J., Jonsson H., Schnürer J., Roos S. ( 2002 ). Weissella soli sp. nov., a lactic acid bacterium isolated from soil. . Int J Syst Evol Microbiol 52, 831–834. [View Article] [PubMed]
    [Google Scholar]
14. Minamida K., Ota K., Nishimukai M., Tanaka M., Abe A., Sone T., Tomita F., Hara H., Asano K. ( 2008 ). Asaccharobacter celatus gen. nov., sp. nov., isolated from rat caecum. . Int J Syst Evol Microbiol 58, 1238–1240. [View Article] [PubMed]
    [Google Scholar]
15. Padonou S. W., Schillinger U., Nielsen D. S., Franz C. M., Hansen M., Hounhouigan J. D., Nago M. C., Jakobsen M. ( 2010 ). Weissella beninensis sp. nov., a motile lactic acid bacterium from submerged cassava fermentations, and emended description of the genus Weissella . . Int J Syst Evol Microbiol 60, 2193–2198. [View Article] [PubMed]
    [Google Scholar]
16. Saito H., Miura K. I. ( 1963 ). Preparation of transforming deoxyribonucleic acid by phenol treatment. . Biochim Biophys Acta 72, 619–629. [View Article] [PubMed]
    [Google Scholar]
17. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
18. Stackebrandt E., Ebers J. ( 2006 ). Taxonomic parameters revisited: tarnished gold standards. . Microbiol Today 33, 152–155.
    [Google Scholar]
19. Suzuki K., Sasaki J., Uramoto M., Nakase T., Komagata K. ( 1996 ). Agromyces mediolanus sp. nov., nom. rev., comb. nov., a species for “Corynebacterium mediolanum” Mamoli 1939 and for some aniline-assimilating bacteria which contain 2,4-diaminobutyric acid in the cell wall peptidoglycan. . Int J Syst Bacteriol 46, 88–93. [View Article] [PubMed]
    [Google Scholar]
20. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 2731–2739. [View Article] [PubMed]
    [Google Scholar]
21. Tohno M., Kobayashi H., Nomura M., Kitahara M., Ohkuma M., Uegaki R., Cai Y. ( 2012a ). Genotypic and phenotypic characterization of lactic acid bacteria isolated from Italian ryegrass silage. . Anim Sci J 83, 111–120. [View Article] [PubMed]
    [Google Scholar]
22. Tohno M., Kobayashi H., Nomura M., Uegaki R., Cai Y. ( 2012b ). Indentification and characterizaiton of lactic acid bacteria isolated from mixed pasture of timothy and orchardgrass, and its badly preserved silage. . Anim Sci J 83, 318–330. [View Article] [PubMed]
    [Google Scholar]
23. Vela A. I., Fernandez A., Bernaldo de Quiros Y., Herraez P., Dominguez L., Fernandez-Garayzabal J. F. ( 2011 ). Weissella ceti sp. nov., isolated from beaked whales (Mesoplodon bidens). . Int J Syst Evol Microbiol 61, 2758–2762. [View Article] [PubMed]
    [Google Scholar]