1887

Abstract

A Gram-negative, non-spore-forming, aerobic, non-flagellated, non-gliding rod, designated YCS-9, was isolated from seawater in the South Sea, South Korea. Strain YCS-9 grew optimally at 25 °C, at pH 7.0–8.0 and in the presence of 2 % (w/v) NaCl. In the neighbour-joining phylogenetic tree based on 16S rRNA gene sequences, strain YCS-9 fell within the family and formed a cluster with MTT-39 with a bootstrap resampling value of 75.4 %. Strain YCS-9 showed 92.3 % 16S rRNA gene sequence similarity to MTT-39 and 89.0–93.7 % sequence similarity to the other strains used in the phylogenetic analysis. Strain YCS-9 contained MK-6 as the only menaquinone and iso-C G, iso-C and iso-C 3-OH as the major fatty acids. The major polar lipids were one unidentified lipid and one unidentified aminolipid. The DNA G+C content was 34.2 mol%. Strain YCS-9 could be differentiated from NBRC 102624 by differences in fatty acid composition, polar lipid profile and some phenotypic properties. On the basis of phenotypic, chemotaxonomic and phylogenetic data, strain YCS-9 represents a novel species in a new genus within the phylum , for which the name gen. nov., sp. nov. is proposed. The type strain of is YCS-9 ( = KCTC 23884  = CCUG 62114). An emended description of the genus is also presented.

Funding
This study was supported by the:
  • Program for Collection, Management and Utilization of Biological Resources (Award M10867010003)
  • BK 21 program from the Ministry of Education, Science and Technology (MEST) of South Korea
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.043513-0
2013-05-01
2024-04-20
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/63/5/1696.html?itemId=/content/journal/ijsem/10.1099/ijs.0.043513-0&mimeType=html&fmt=ahah

References

  1. Asker D., Beppu T., Ueda K. ( 2007 ). Mesoflavibacter zeaxanthinifaciens gen. nov., sp. nov., a novel zeaxanthin-producing marine bacterium of the family Flavobacteriaceae . . Syst Appl Microbiol 30, 291296. [View Article] [PubMed]
    [Google Scholar]
  2. Baumann P., Baumann L. ( 1981 ). The marine Gram-negative eubacteria: genera Photobacterium, Beneckea, Alteromonas, Pseudomonas, and Alcaligenes . . In The Prokaryotes, pp. 13021331. Edited by Starr M. P., Stolp H., Trüper H. G., Balows A., Schlegel H. G. . Berlin:: Springer-Verlag;.
    [Google Scholar]
  3. Bernardet J.-F. ( 2011 ). Family I. Flavobacteriaceae Reichenbach 1992. .In Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 4, pp. 106111. Edited by Krieg N. R., Ludwig W., Whitman W. B., Hedlund B. P., Paster B. J., Staley J. T., Ward N., Brown D., Parte A. . New York:: Springer;.
    [Google Scholar]
  4. Bernardet J.-F., Nakagawa Y., Holmes B. Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes ( 2002 ). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. . Int J Syst Evol Microbiol 52, 10491070. [View Article] [PubMed]
    [Google Scholar]
  5. Bowman J. P. ( 2000 ). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulopha gauliginosa comb. nov.. Int J Syst Evol Microbiol 50, 18611868.[PubMed]
    [Google Scholar]
  6. Bruns A., Rohde M., Berthe-Corti L. ( 2001 ). Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. . Int J Syst Evol Microbiol 51, 19972006. [View Article] [PubMed]
    [Google Scholar]
  7. Cohen-Bazire G., Sistrom W. R., Stanier R. Y. ( 1957 ). Kinetic studies of pigment synthesis by non-sulfur purple bacteria. . J Cell Physiol 49, 2568. [View Article] [PubMed]
    [Google Scholar]
  8. Cowan S. T., Steel K. J. ( 1965 ). Manual for the Identification of Medical Bacteria. London:: Cambridge University Press;.
    [Google Scholar]
  9. Khan S. T., Nakagawa Y., Harayama S. ( 2007 ). Sediminibacter furfurosus gen. nov., sp. nov. and Gilvibacter sediminis gen. nov., sp. nov., novel members of the family Flavobacteriaceae . . Int J Syst Evol Microbiol 57, 265269. [View Article] [PubMed]
    [Google Scholar]
  10. Khan S. T., Nakagawa Y., Harayama S. ( 2008 ). Fulvibacter tottoriensis gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from marine sediment. . Int J Syst Evol Microbiol 58, 16701674. [View Article] [PubMed]
    [Google Scholar]
  11. Komagata K., Suzuki K. ( 1987 ). Lipid and cell-wall analysis in bacterial systematics. . Methods Microbiol 19, 161207. [View Article]
    [Google Scholar]
  12. Lányí B. ( 1987 ). Classical and rapid identification methods for medically important bacteria. . Methods Microbiol 19, 167. [View Article]
    [Google Scholar]
  13. Lee S.-Y., Park S., Oh T.-K., Yoon J.-H. ( 2010 ). Description of Olleya aquimaris sp. nov., isolated from seawater, and emended description of the genus Olleya Mancuso Nichols et al. 2005. . Int J Syst Evol Microbiol 60, 887891. [View Article] [PubMed]
    [Google Scholar]
  14. Mahasneh A. M., Stewart D. J. ( 1980 ). A medium for detecting β-(1→3) glucanase activity in bacteria. . J Appl Microbiol 48, 457458. [View Article]
    [Google Scholar]
  15. Minnikin D. E., Patel P. V., Alshamaony L., Goodfellow M. ( 1977 ). Polar lipid composition in the classification of Nocardia and related bacteria. . Int J Syst Bacteriol 27, 104117. [View Article]
    [Google Scholar]
  16. Minnikin D. E., O’Donnell A. G., Goodfellow M., Alderson G., Athalye M., Schaal A., Parlett J. H. ( 1984 ). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. . J Microbiol Methods 2, 233241. [View Article]
    [Google Scholar]
  17. Nedashkovskaya O. I., Kwon K. K., Yang S.-H., Lee H.-S., Chung K. H., Kim S.-J. ( 2008 ). Lacinutrix algicola sp. nov. and Lacinutrix mariniflava sp. nov., two novel marine alga-associated bacteria and emended description of the genus Lacinutrix . . Int J Syst Evol Microbiol 58, 26942698. [View Article] [PubMed]
    [Google Scholar]
  18. Reichenbach H. ( 1992 ). The order Cytophagales . . In The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications, , 2nd edn., pp. 36313675. Edited by Balows A., Trüper H. G., Dworkin M., Harder W., Schleifer K. H. . New York:: Springer;.
    [Google Scholar]
  19. Rodriguez-Kabana R., Godoy G., Morgan-Jones G., Shelby R. A. ( 1983 ). The determination of soil chitinase activity: conditions for assay and ecological studies. . Plant Soil 75, 95106. [View Article]
    [Google Scholar]
  20. Sasser M. ( 1990 ). Identification of bacteria by gas chromatography of cellular fatty acids. Newark, DE:: MIDI Inc;.
    [Google Scholar]
  21. Staley J. T. ( 1968 ). Prosthecomicrobium and Ancalomicrobium: new prosthecate freshwater bacteria. . J Bacteriol 95, 19211942.[PubMed]
    [Google Scholar]
  22. Tamaoka J., Komagata K. ( 1984 ). Determination of DNA base composition by reverse-phase high-performance liquid chromatography. . FEMS Microbiol Lett 25, 125128. [View Article]
    [Google Scholar]
  23. Yoon J.-H., Kim H., Kim S.-B., Kim H.-J., Kim W. Y., Lee S. T., Goodfellow M., Park Y.-H. ( 1996 ). Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. . Int J Syst Bacteriol 46, 502505. [View Article]
    [Google Scholar]
  24. Yoon J.-H., Lee S. T., Park Y.-H. ( 1998 ). Inter- and intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. . Int J Syst Bacteriol 48, 187194. [View Article] [PubMed]
    [Google Scholar]
  25. Yoon J.-H., Kang K. H., Park Y.-H. ( 2003 ). Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. . Int J Syst Evol Microbiol 53, 449454. [View Article] [PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.043513-0
Loading
/content/journal/ijsem/10.1099/ijs.0.043513-0
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error