1887

Abstract

An aerobic, Gram-stain-negative, yellow-pigmented, non-motile, rod-shaped bacterium designated strain KMM 9005 was isolated from a sediment sample collected from the Sea of Japan seashore. Comparative 16S rRNA gene sequence analysis showed that strain KMM 9005 belonged to the genus and was most closely related to KCTC 23627 (96.5 % sequence similarity) and LMG 24212 (96.1 % sequence similarity). Strain KMM 9005 was characterized by the presence of thin fimbriae, the major ubiquinone Q-8, by the predominance of iso-C followed by iso-C, iso-C and iso-C in its fatty acid profile, weak hydrolytic capacity and the inability to assimilate most organic substrates. Based on these distinctive phenotypic characteristics and phylogenetic analysis, strain KMM 9005 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is KMM 9005 ( = NRIC 0881 = JCM 18392).

Funding
This study was supported by the:
  • Russian Foundation for Basic Research (RFBR)
  • Far-Eastern Branch of Russian Academy of Sciences (Award 11-04-98538)
  • RFBR (Award 11-04-00781-a))
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2013-04-01
2024-03-29
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References

  1. Baik K. S., Park S. C., Kim M. S., Kim E. M., Park C., Chun J., Seong C. N. ( 2008 ). Luteimonas marina sp. nov., isolated from seawater. . Int J Syst Evol Microbiol 58, 29042908. [View Article] [PubMed]
    [Google Scholar]
  2. Chou J. H., Cho N. T., Arun A. B., Young C. C., Chen W. M. ( 2008 ). Luteimonas aquatica sp. nov., isolated from fresh water from Southern Taiwan. . Int J Syst Evol Microbiol 58, 20512055. [View Article] [PubMed]
    [Google Scholar]
  3. Collins M. D., Shah H. N. ( 1984 ). Fatty acid, menaquinone and polar lipid composition of Rothia dentosacariosa . . Arch Microbiol 137, 247249. [View Article]
    [Google Scholar]
  4. Finkmann W., Altendorf K., Stackebrandt E., Lipski A. ( 2000 ). Characterization of N2O-producing Xanthomonas-like isolates from biofilters as Stenotrophomonas nitritireducens sp. nov., Luteimonas mephitis gen. nov., sp. nov. and Pseudoxanthomonas broegbernensis gen. nov., sp. nov.. Int J Syst Evol Microbiol 50, 273282. [View Article] [PubMed]
    [Google Scholar]
  5. Folch J., Lees M., Sloane Stanley G. H. ( 1957 ). A simple method for the isolation and purification of total lipides from animal tissues. . J Biol Chem 226, 497509.[PubMed]
    [Google Scholar]
  6. Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. (editors) ( 1994 ). Methods for General and Molecular Bacteriology. Washington, DC:: American Society for Microbiology;.
    [Google Scholar]
  7. Leifson E. ( 1963 ). Determination of carbohydrate metabolism of marine bacteria. . J Bacteriol 85, 11831184.[PubMed]
    [Google Scholar]
  8. Mitchell K., Fallon R. J. ( 1990 ). The determination of ubiquinone profiles by reversed-phase high performance thin-layer chromatography as an aid to the speciation of Legionellaceae . . J Gen Microbiol 136, 20352041. [View Article]
    [Google Scholar]
  9. Park Y. J., Park M. S., Lee S. H., Park W., Lee K., Jeon C. O. ( 2011 ). Luteimonas lutimaris sp. nov., isolated from a tidal flat. . Int J Syst Evol Microbiol 61, 27292733. [View Article] [PubMed]
    [Google Scholar]
  10. Pearson W. R., Lipman D. J. ( 1988 ). Improved tools for biological sequence comparison. . Proc Natl Acad Sci U S A 85, 24442448. [View Article] [PubMed]
    [Google Scholar]
  11. Roh S. W., Kim K. H., Nam Y. D., Chang H. W., Kim M. S., Yoon J. H., Oh H. M., Bae J. W. ( 2008 ). Luteimonas aestuarii sp. nov., isolated from tidal flat sediment. . J Microbiol 46, 525529. [View Article] [PubMed]
    [Google Scholar]
  12. Romanenko L. A., Schumann P., Zhukova N. V., Rohde M., Mikhailov V. V., Stackebrandt E. ( 2003 ). Oceanisphaera litoralis gen. nov., sp. nov., a novel halophilic bacterium from marine bottom sediments. . Int J Syst Evol Microbiol 53, 18851888. [View Article] [PubMed]
    [Google Scholar]
  13. Romanenko L. A., Schumann P., Rohde M., Mikhailov V. V., Stackebrandt E. ( 2004 ). Reinekea marinisedimentorum gen. nov., sp. nov., a novel gammaproteobacterium from marine coastal sediments. . Int J Syst Evol Microbiol 54, 669673. [View Article] [PubMed]
    [Google Scholar]
  14. Romanenko L. A., Schumann P., Rohde M., Zhukova N. V., Mikhailov V. V., Stackebrandt E. ( 2005 ). Marinobacter bryozoorum sp. nov. and Marinobacter sediminum sp. nov., novel bacteria from the marine environment. . Int J Syst Evol Microbiol 55, 143148. [View Article] [PubMed]
    [Google Scholar]
  15. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
  16. Shida O., Takagi H., Kadowaki K., Nakamura L. K., Komagata K. ( 1997 ). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus . . Int J Syst Bacteriol 47, 289298. [View Article] [PubMed]
    [Google Scholar]
  17. Stackebrandt E., Ebers J. ( 2006 ). Taxonomic parameters revisited: tarnished gold standards. . Microbiol Today 33, 152155.
    [Google Scholar]
  18. Stackebrandt E., Goebel B. M. ( 1994 ). Taxonomic note: a place for DNA–DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. . Int J Syst Bacteriol 44, 846849. [View Article]
    [Google Scholar]
  19. Sun Z.-B., Zhang H., Yuan X.-F., Wang Y.-X., Feng D.-M., Wang Y.-H., Feng Y.-J. ( 2012 ). Luteimonas cucumeris sp. nov., isolated from cucumber blade. . Int J Syst Evol Microbiol 62, 29162920.[PubMed] [CrossRef]
    [Google Scholar]
  20. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 27312739. [View Article] [PubMed]
    [Google Scholar]
  21. Ten L. N., Jung H. M., Im W. T., Yoo S. A., Oh H. M., Lee S. T. ( 2009 ). Lysobacter panaciterrae sp. nov., isolated from soil of a ginseng field. . Int J Syst Evol Microbiol 59, 958963. [View Article] [PubMed]
    [Google Scholar]
  22. Thompson J. D., Gibson T. J., Higgins D. G. ( 2002;). Multiple sequence alignment using clustal w and clustal_x . . In Current Protocol in Bioinformatics, pp. 2.3.12.3.22. Edited by Baxevanis A. D., Stein L. D., Stormo G. D., Yates J. R. III . JR Hoboken, NJ:: John Wiley & Sons, Inc;. [View Article]
    [Google Scholar]
  23. Young C. C., Kämpfer P., Chen W. M., Yen W. S., Arun A. B., Lai W. A., Shen F. T., Rekha P. D., Lin K. Y., Chou J. H. ( 2007 ). Luteimonas composti sp. nov., a moderately thermophilic bacterium isolated from food waste. . Int J Syst Evol Microbiol 57, 741744. [View Article] [PubMed]
    [Google Scholar]
  24. Zhang D. C., Liu H. C., Xin Y. H., Zhou Y. G., Schinner F., Margesin R. ( 2010 ). Luteimonas terricola sp. nov., a psychrophilic bacterium isolated from soil. . Int J Syst Evol Microbiol 60, 15811584. [View Article] [PubMed]
    [Google Scholar]
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