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Abstract

A Gram-staining-negative, pale-pink-pigmented, non-motile, obligately aerobic and rod-shaped bacterium, designated strain W37, was isolated from soil and subjected to a taxonomic investigation using a polyphasic approach. The strain grew at 1–30 °C, oxidized thiosulfate and accumulated polyhydroxyalkanoates. Photosynthetic pigments were represented by bacteriochlorophyll and carotenoids. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain W37 was most closely related to members of the genera and (with sequence similarities of <92.8 %) but formed a distinct lineage in the family . The polar lipid profile comprised diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylcholine, three unidentified aminolipids and one other unidentified lipid. The predominant cellular fatty acids were Cω7 and summed feature 3 (Cω7 and/or iso-C 2-OH). The DNA G+C content of strain W37 was 68.2 mol%. On the basis of phenotypic characteristics and phylogenetic analysis, strain W37 represents a novel species of a new genus in the family , for which the name gen. nov., sp. nov. is proposed. The type strain of the type species is W37 ( = CIP 110261 = LMG 26243).

Funding
This study was supported by the:
  • Autonome Provinz Bozen, Südtirol
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2013-04-01
2024-04-24
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References

  1. Alarico S., Rainey F. A., Empadinhas N., Schumann P., Nobre M. F., da Costa M. S. ( 2002 ). Rubritepida flocculans gen. nov., sp. nov., a new slightly thermophilic member of the α-1 subclass of the Proteobacteria . . Syst Appl Microbiol 25, 198206. [View Article] [PubMed]
    [Google Scholar]
  2. Béjà O., Suzuki M. T., Heidelberg J. F., Nelson W. C., Preston C. M., Hamada T., Eisen J. A., Fraser C. M., DeLong E. F. ( 2002 ). Unsuspected diversity among marine aerobic anoxygenic phototrophs. . Nature 415, 630633. [View Article] [PubMed]
    [Google Scholar]
  3. Boldareva E. N., Tourova T. P., Kolganova T. V., Moskalenko A. A., Makhneva Z. K., Gorlenko V. M. ( 2009 ). Roseococcus suduntuyensis sp. nov., a new aerobic bacteriochlorophyll a-containing bacterium isolated from a low-mineralized soda lake of Eastern Siberia. . Microbiology (English translation of Mikrobiologiya) 78, 92101.
    [Google Scholar]
  4. Cavicchioli R. ( 2006 ). Cold-adapted archaea. . Nat Rev Microbiol 4, 331343. [View Article] [PubMed]
    [Google Scholar]
  5. Feller G., Gerday C. ( 2003 ). Psychrophilic enzymes: hot topics in cold adaptation. . Nat Rev Microbiol 1, 200208. [View Article] [PubMed]
    [Google Scholar]
  6. Felsenstein J. ( 1981 ). Evolutionary trees from DNA sequences: a maximum likelihood approach. . J Mol Evol 17, 368376. [View Article] [PubMed]
    [Google Scholar]
  7. Harrison A. P. Jr ( 1981 ). Acidiphilium cryptum gen. nov., sp. nov., heterotrophic bacterium from acidic mineral environments. . Int J Syst Bacteriol 31, 327332. [View Article]
    [Google Scholar]
  8. Imhoff J. F., Caumette P. ( 2004 ). Recommended standards for the description of new species of anoxygenic phototrophic bacteria. . Int J Syst Evol Microbiol 54, 14151421. [View Article] [PubMed]
    [Google Scholar]
  9. Kersters K., de Vos P., Gillis M., Swings J., Vandamme P., Stackebrandt E. ( 2006 ). Introduction to the Proteobacteria. . Prokaryotes 5, 337. [View Article]
    [Google Scholar]
  10. Lange B., Vejdelek Z. J. ( 1980 ). Photometrische Analyse. Weinheim:: Verlag Chemie;.
    [Google Scholar]
  11. Margesin R. ( 2009 ). Effect of temperature on growth parameters of psychrophilic bacteria and yeasts. . Extremophiles 13, 257262. [View Article] [PubMed]
    [Google Scholar]
  12. Margesin R., Gander S., Zacke G., Gounot A. M., Schinner F. ( 2003 ). Hydrocarbon degradation and enzyme activities of cold-adapted bacteria and yeasts. . Extremophiles 7, 451458. [View Article] [PubMed]
    [Google Scholar]
  13. Mesbah M., Premachandran U., Whitman W. B. ( 1989 ). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. . Int J Syst Bacteriol 39, 159167. [View Article]
    [Google Scholar]
  14. Morita R. Y. ( 1975 ). Psychrophilic bacteria. . Bacteriol Rev 39, 144167.[PubMed]
    [Google Scholar]
  15. Reasoner D. J., Geldreich E. E. ( 1985 ). A new medium for the enumeration and subculture of bacteria from potable water. . Appl Environ Microbiol 49, 17.[PubMed]
    [Google Scholar]
  16. Saitoh S., Suzuki T., Nishimura Y. ( 1998 ). Proposal of Craurococcus roseus gen. nov., sp. nov. and Paracraurococcus ruber gen. nov., sp. nov., novel aerobic bacteriochlorophyll a-containing bacteria from soil. . Int J Syst Bacteriol 48, 10431047. [View Article] [PubMed]
    [Google Scholar]
  17. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406425.[PubMed]
    [Google Scholar]
  18. Sambrook J., Frisch E. F., Maniatis T. ( 1989 ). Molecular Cloning: a Laboratory Manual, , 2nd edn.. Cold Spring Harbor, NY:: Cold Spring Harbor Laboratory;.
    [Google Scholar]
  19. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
  20. Shi B. H., Arunpairojana V., Palakawong S., Yokota A. ( 2002 ). Tistrella mobilis gen nov, sp nov, a novel polyhydroxyalkanoate-producing bacterium belonging to α-Proteobacteria . . J Gen Appl Microbiol 48, 335343. [View Article] [PubMed]
    [Google Scholar]
  21. Shiba T., Simidu U., Taga N. ( 1979 ). Distribution of aerobic bacteria which contain bacteriochlorophyll a . . Appl Environ Microbiol 38, 4345.[PubMed]
    [Google Scholar]
  22. Stackebrandt E., Goebel B. M. ( 1994 ). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. . Int J Syst Bacteriol 44, 846849. [View Article]
    [Google Scholar]
  23. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. ( 2011 ). mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. . Mol Biol Evol 28, 27312739. [View Article] [PubMed]
    [Google Scholar]
  24. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. ( 1997 ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25, 48764882. [View Article] [PubMed]
    [Google Scholar]
  25. Tindall B. J. ( 1990a ). Lipid composition of Halobacterium lacusprofundi . . FEMS Microbiol Lett 66, 199202. [View Article]
    [Google Scholar]
  26. Tindall B. J. ( 1990b ). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. . Syst Appl Microbiol 13, 128130. [View Article]
    [Google Scholar]
  27. Yu Y., Yan S.-L., Li H.-R., Zhang X.-H. ( 2011 ). Roseicitreum antarcticum gen. nov., sp. nov., an aerobic bacteriochlorophyll a-containing alphaproteobacterium isolated from Antarctic sandy intertidal sediment. . Int J Syst Evol Microbiol 61, 21732179. [View Article] [PubMed]
    [Google Scholar]
  28. Yurkov V. V. ( 2006 ). Aerobic phototrophic bacteria. . Prokaryotes 5, 562584. [View Article]
    [Google Scholar]
  29. Yurkov V. V., Beatty J. T. ( 1998 ). Aerobic anoxygenic phototrophic bacteria. . Microbiol Mol Biol Rev 62, 695724.[PubMed]
    [Google Scholar]
  30. Yurkov V., Stackebrandt E., Holmes A., Fuerst J. A., Hugenholtz P., Golecki J., Gad’on N., Gorlenko V. M., Kompantseva E. I., Drews G. ( 1994 ). Phylogenetic positions of novel aerobic, bacteriochlorophyll a-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov.. Int J Syst Bacteriol 44, 427434. [View Article] [PubMed]
    [Google Scholar]
  31. Yurkov V., Stackebrandt E., Buss O., Vermeglio A., Gorlenko V., Beatty J. T. ( 1997 ). Reorganization of the genus Erythromicrobium: description of “Erythromicrobium sibiricum” as Sandaracinobacter sibiricus gen. nov., sp. nov., and of “Erythromicrobium ursincola” as Erythromonas ursincola gen. nov., sp. nov.. Int J Syst Bacteriol 47, 11721178. [View Article] [PubMed]
    [Google Scholar]
  32. Zhang D.-C., Schinner F., Margesin R. ( 2010 ). Pedobacter bauzanensis sp. nov., isolated from soil. . Int J Syst Evol Microbiol 60, 25922595. [View Article] [PubMed]
    [Google Scholar]
  33. Zhang D.-C., Liu H.-C., Zhou Y.-G., Schinner F., Margesin R. ( 2011a ). Pseudomonas bauzanensis sp. nov., isolated from soil. . Int J Syst Evol Microbiol 61, 23332337. [View Article] [PubMed]
    [Google Scholar]
  34. Zhang D.-C., Liu H.-C., Zhou Y.-G., Schinner F., Margesin R. ( 2011b ). Tistrella bauzanensis sp. nov., isolated from soil. . Int J Syst Evol Microbiol 61, 22272230. [View Article] [PubMed]
    [Google Scholar]
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