1887

Abstract

A Gram-negative, coccoid-shaped bacterium, strain CC-CCM15-8, was isolated from a rhizosphere soil sample of the plant (L.) Makino (Seremban) from Budai Township, Chiayi County, Taiwan. 16S rRNA gene sequence analysis clearly allocated strain CC-CCM15-8 to the cluster, showing highest similarities to the type strains of ‘’ (98.8 %), (97.6 %), (97.7 %) and (97.7 %). The fatty acid profile, comprising Cω7 as the major component and C 3-OH as the characteristic hydroxylated fatty acid, supported the placement of strain CC-CCM15-8 within the genus . The polyamine pattern consisted of putrescine and spermidine as major components. Ubiqinone Q-10 was the major quinone type (95 %); ubiquinone Q-9 was also detected (5 %). The complex polar lipid profile consisted of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine, and unidentified phospholipids, lipids and glycolipids. Levels of DNA–DNA relatedness between strain CC-CCM15-8 and ‘’ LMG 25871, DSM 19484, LMG 21993 and KACC 11518 were 24.9 % (34.8 %, reciprocal analysis), 15.7 % (17.5 %), 17.7 % (23.4 %) and 16.0 % (25.4 %), respectively. Physiological and biochemical test results allowed the phenotypic differentiation of strain CC-CCM15-8 from its closest relatives in the genus . Based on the data presented, it is concluded that strain CC-CCM15-8 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is CC-CCM15-8 ( = LMG 26205 = CCM 7904).

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2012-11-01
2024-03-29
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References

  1. Beijerinck M. W., Minkman D. C. J. 1910; Bildung und verbrauch von stickstoffoxyd durch bakterien. Zentralbl. Bakt. Hyg. 25:30–63
    [Google Scholar]
  2. Berry A., Janssens D., Hümbelin M., Jore J. P. M., Hoste B., Cleenwerck I., Vancanneyt M., Bretzel W., Mayer A. F. other authors 2003; Paracoccus zeaxanthinifaciens sp. nov., a zeaxanthin-producing bacterium. Int J Syst Evol Microbiol 53:231–238 [View Article][PubMed]
    [Google Scholar]
  3. Busse H. J., Auling G. 1988; Polyamine pattern as a chemotaxonomic marker within the Proteobacteria . Syst Appl Microbiol 11:1–8 [View Article]
    [Google Scholar]
  4. Chen M. H., Sheu S. Y., Chen C. A., Wang J. T., Chen W. M. 2011; Paracoccus isoporae sp. nov., isolated from the reef-building coral Isopora palifera . Int J Syst Evol Microbiol 61:1138–1143 [View Article][PubMed]
    [Google Scholar]
  5. Collins M. D., Jones D. 1980; Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J Appl Bacteriol 48:459–470 [View Article]
    [Google Scholar]
  6. Collins M. D., Pirouz T., Goodfellow M., Minnikin D. E. 1977; Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230 [View Article][PubMed]
    [Google Scholar]
  7. Daneshvar M. I., Hollis D. G., Weyant R. S., Steigerwalt A. G., Whitney A. M., Douglas M. P., Macgregor J. P., Jordan J. G., Mayer L. W. other authors 2003; Paracoccus yeeii sp. nov. (formerly CDC group EO-2), a novel bacterial species associated with human infection. J Clin Microbiol 41:1289–1294 [View Article][PubMed]
    [Google Scholar]
  8. Davis D. H., Doudoroff M., Stanier R. Y., Mandel M. 1969; Proposal to reject the genus Hydrogenomonas: taxonomic implications. Int J Syst Bacteriol 19:375–390 [View Article]
    [Google Scholar]
  9. Deng Z. S., Zhao L. F., Xu L., Kong Z. Y., Zhao P., Qin W., Chang J. L., Wei G. H. 2011; Paracoccus sphaerophysae sp. nov., a siderophore-producing, endophytic bacterium isolated from root nodules of Sphaerophysa salsula . Int J Syst Evol Microbiol 61:665–669 [View Article][PubMed]
    [Google Scholar]
  10. Doronina N. V., Trotsenko Y. A. 2000; A novel plant-associated thermotolerant alkaliphilic methylotroph of the genus Paracoccus . Microbiology 69:593–598 (in Russian) [View Article]
    [Google Scholar]
  11. Doronina N. V., Trotsenko Y. A., Krausova V. I., Suzina N. E. 1998; Paracoccus methylutens sp. nov. – a new aerobic facultatively methylotrophic bacterium utilizing dichloromethane. Syst Appl Microbiol 21:230–236 [View Article]
    [Google Scholar]
  12. Doronina N. V., Trotsenko Y. A., Kuznetzov B. B., Tourova T. P. 2002; Emended description of Paracoccus kondratievae . Int J Syst Evol Microbiol 52:679–682[PubMed] [CrossRef]
    [Google Scholar]
  13. Ghosh W., Mandal S., Roy P. 2006; Paracoccus bengalensis sp. nov., a novel sulfur-oxidizing chemolithoautotroph from the rhizospheric soil of an Indian tropical leguminous plant. Syst Appl Microbiol 29:396–403 [View Article][PubMed]
    [Google Scholar]
  14. Groth I., Schumann P., Weiss N., Martin K., Rainey F. A. 1996; Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46:234–239 [View Article][PubMed]
    [Google Scholar]
  15. Hamana K., Matsuzaki S. 1992; Taxonomic significance of polyamine synthesis in Paracoccus . J Gen Appl Microbiol 38:93–103 [View Article]
    [Google Scholar]
  16. Harker M., Hirschberg J., Oren A. 1998; Paracoccus marcusii sp. nov., an orange gram-negative coccus. Int J Syst Bacteriol 48:543–548[PubMed] [CrossRef]
    [Google Scholar]
  17. Harrison A. P. 1983; Genomic and physiological comparisons between heterotrophic thiobacilli and Acidiphilium cryptum, Thiobacillus versutus sp. nov., and Thiobacillus acidophilus nom. rev. Int J Syst Bacteriol 33:211–217 [View Article]
    [Google Scholar]
  18. Kämpfer P., Kroppenstedt R. M. 1996; Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42:989–1005 [View Article]
    [Google Scholar]
  19. Kämpfer P., Kroppenstedt R. M. 2004; Pseudonocardia benzenivorans sp. nov. Int J Syst Evol Microbiol 54:749–751 [View Article]
    [Google Scholar]
  20. Kämpfer P., Steiof M., Dott W. 1991; Microbiological characterisation of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21:227–251 [View Article]
    [Google Scholar]
  21. Kämpfer P., Dreyer U., Neef A., Dott W., Busse H.-J. 2003; Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol 53:93–97 [View Article][PubMed]
    [Google Scholar]
  22. Katayama Y., Hiraishi A., Kuraishi H. 1995; Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with emendation of the genus. Microbiology 141:1469–1477 [View Article][PubMed]
    [Google Scholar]
  23. Khan S. T., Takaichi S., Harayama S. 2008; Paracoccus marinus sp. nov., an adonixanthin diglucoside-producing bacterium isolated from coastal seawater in Tokyo Bay. Int J Syst Evol Microbiol 58:383–386 [View Article][PubMed]
    [Google Scholar]
  24. Kim B. Y., Weon H. Y., Yoo S. H., Kwon S. W., Cho Y. H., Stackebrandt E., Go S. J. 2006; Paracoccus homiensis sp. nov., isolated from a sea-sand sample. Int J Syst Evol Microbiol 56:2387–2390 [View Article][PubMed]
    [Google Scholar]
  25. Kim Y. O., Kong H. J., Park S., Kang S. J., Kim K. K., Moon D. Y., Oh T. K., Yoon J. H. 2010; Paracoccus fistulariae sp. nov., a lipolytic bacterium isolated from bluespotted cornetfish, Fistularia commersonii . Int J Syst Evol Microbiol 60:2908–2912 [View Article][PubMed]
    [Google Scholar]
  26. La H. J., Im W. T., Ten L. N., Kang M. S., Shin D. Y., Lee S. T. 2005; Paracoccus koreensis sp. nov., isolated from anaerobic granules in an upflow anaerobic sludge blanket (UASB) reactor. Int J Syst Evol Microbiol 55:1657–1660 [View Article][PubMed]
    [Google Scholar]
  27. Lee J. H., Kim Y. S., Choi T. J., Lee W. J., Kim Y. T. 2004; Paracoccus haeundaensis sp. nov., a Gram-negative, halophilic, astaxanthin-producing bacterium. Int J Syst Evol Microbiol 54:1699–1702 [View Article][PubMed]
    [Google Scholar]
  28. Li H. F., Qu J. H., Yang J. S., Li Z. J., Yuan H. L. 2009; Paracoccus chinensis sp. nov., isolated from sediment of a reservoir. Int J Syst Evol Microbiol 59:2670–2674 [View Article][PubMed]
    [Google Scholar]
  29. Lipski A., Reichert K., Reuter B., Spröer C., Altendorf K. 1998; Identification of bacterial isolates from biofilters as Paracoccus alkenifer sp. nov. and Paracoccus solventivorans with emended description of Paracoccus solventivorans . Int J Syst Bacteriol 48:529–536 [View Article][PubMed]
    [Google Scholar]
  30. Liu X. Y., Wang B. J., Jiang C. Y., Liu S. J. 2006; Paracoccus sulfuroxidans sp. nov., a sulfur oxidizer from activated sludge. Int J Syst Evol Microbiol 56:2693–2695 [View Article][PubMed]
    [Google Scholar]
  31. Liu Z. P., Wang B. J., Liu X. Y., Dai X., Liu Y. H., Liu S. J. 2008; Paracoccus halophilus sp. nov., isolated from marine sediment of the South China Sea, China, and emended description of genus Paracoccus Davis 1969. Int J Syst Evol Microbiol 58:257–261 [View Article][PubMed]
    [Google Scholar]
  32. Ludwig W., Mittenhuber G., Friedrich C. G. 1993; Transfer of Thiosphaera pantotropha to Paracoccus denitrificans . Int J Syst Bacteriol 43:363–367 [View Article][PubMed]
    [Google Scholar]
  33. Minnikin D. E., Collins M. D., Goodfellow M. 1979; Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47:87–95 [View Article]
    [Google Scholar]
  34. Nokhal T. H., Schlegel H. G. 1983; Taxonomic study of Paracoccus denitrificans . Int J Syst Bacteriol 33:26–37 [View Article]
    [Google Scholar]
  35. Ohara M., Katayama Y., Tsuzaki M., Nakamoto S., Kuraishi H. 1990; Paracoccus kocurii sp. nov., a tetramethylammonium-assimilating bacterium. Int J Syst Bacteriol 40:292–296 [View Article][PubMed]
    [Google Scholar]
  36. Pukall R., Laroche M., Kroppenstedt R. M., Schumann P., Stackebrandt E., Ulber R. 2003; Paracoccus seriniphilus sp. nov., an l-serine-dehydratase-producing coccus isolated from the marine bryozoan Bugula plumosa . Int J Syst Evol Microbiol 53:443–447 [View Article][PubMed]
    [Google Scholar]
  37. Rainey F. A., Kelly D. P., Stackebrandt E., Burghardt J., Hiraishi A., Katayama Y., Wood A. P. 1999; A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov.. Int J Syst Bacteriol 49:645–651 [View Article][PubMed]
    [Google Scholar]
  38. Robertson I. A., Kuenen J. G. 1983; Thiosphaera pantotropha gen. nov., sp. nov., a facultatively anaerobic, facultatively autotrophic sulphur bacterium.. J Gen Microbiol 129:2847–2855 [View Article]
    [Google Scholar]
  39. Robinson J., Gibbons N. E. 1952; The effect of salts on the growth of Micrococcus halodentrificans n. sp.. Can J Bot 30:147–154 [View Article]
    [Google Scholar]
  40. Roh S. W., Nam Y. D., Chang H. W., Kim K. H., Kim M. S., Shin Robertson K. S., Yoon J. H., Oh H. M., Bae J. W. 2009; Paracoccus aestuarii sp. nov., isolated from tidal flat sediment. Int J Syst Evol Microbiol 59:790–794 [View Article][PubMed]
    [Google Scholar]
  41. Schleifer K. P. 1985; Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18:123–156 [View Article]
    [Google Scholar]
  42. Siller H., Rainey F. A., Stackebrandt E., Winter J. 1996; Isolation and characterization of a new gram-negative, acetone-degrading, nitrate-reducing bacterium from soil, Paracoccus solventivorans sp. nov.. Int J Syst Bacteriol 46:1125–1130 [View Article][PubMed]
    [Google Scholar]
  43. Skerman V. B. D., McGowan V., Sneath P. H. A. 1980; Approved lists of bacterial names. Int J Syst Bacteriol 30:225–420 [CrossRef]
    [Google Scholar]
  44. Stolz A., Busse H.-J., Kämpfer P. 2007; Pseudomonas knackmussii sp. nov.. Int J Syst Evol Microbiol 57:572–576 [View Article][PubMed]
    [Google Scholar]
  45. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [View Article][PubMed]
    [Google Scholar]
  46. Tsubokura A., Yoneda H., Mizuta H. 1999; Paracoccus carotinifaciens sp. nov., a new aerobic gram-negative astaxanthin-producing bacterium. Int J Syst Bacteriol 49:277–282 [View Article][PubMed]
    [Google Scholar]
  47. Urakami T., Tamaoka J., Suzuki K. I., Komagata K. 1989; Paracoccus alcaliphilus sp. nov., an alkaliphilic and facultatively methylotrophic bacterium. Int J Syst Bacteriol 39:116–121 [View Article]
    [Google Scholar]
  48. Urakami T., Araki H., Oyanagi H., Suzuki K. I., Komagata K. 1990; Paracoccus aminophilus sp. nov. and Paracoccus aminovorans sp. nov., which utilize N,N-dimethylformamide. Int J Syst Bacteriol 40:287–291 [View Article][PubMed]
    [Google Scholar]
  49. Wang Y., Tang S. K., Lou K., Mao P. H., Jin X., Jiang C. L., Xu L. H., Li W. J. 2009; Paracoccus saliphilus sp. nov., a halophilic bacterium isolated from a saline soil. Int J Syst Evol Microbiol 59:1924–1928 [View Article][PubMed]
    [Google Scholar]
  50. Zheng Q., Wang Y., Chen C., Wang Y., Xia X., Fu Y., Zhang R., Jiao N. 2011; Paracoccus beibuensis sp. nov., isolated from the South China Sea. Curr Microbiol 62:710–714 [View Article][PubMed]
    [Google Scholar]
  51. Ziemke F., Höfle M. G., Lalucat J., Rosselló-Mora R. 1998; Reclassification of Shewanella putrefaciens Owen’s genomic group II as Shewanella baltica sp. nov.. Int J Syst Bacteriol 48:179–186 [View Article][PubMed]
    [Google Scholar]
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