Species reassignment of Geotrichum bryndzae, Geotrichum phurueaensis, Geotrichum silvicola and Geotrichum vulgare based on phylogenetic analyses and mating compatibility

References

1. Alper I., Frenette M., Labrie S. 2011; Ribosomal DNA polymorphisms in the yeast Geotrichum candidum . Fungal Biol 115:1259–1269 [View Article][PubMed]
   [Google Scholar]
2. Butler E. E., Petersen L. J. 1970; Sexual reproduction on Geotrichum candidum . Science 169:481–482 [View Article][PubMed]
   [Google Scholar]
3. Butler E. E., Petersen L. J. 1972; Endomyces geotrichum a perfect state of Geotrichum candidum . Mycologia 64:365–374 [View Article][PubMed]
   [Google Scholar]
4. Butler E. E., Fogle D., Miranda M. 1988; Galactomyces citri-aurantii, a newly found teleomorph of Geotrichum citri-aurantii, the cause of sour rot of citrus fruit. Mycotaxon 33:197–212
   [Google Scholar]
5. Daniel H.-M., Sorrell T. C., Meyer W. 2001; Partial sequence analysis of the actin gene and its potential for studying the phylogeny of Candida species and their teleomorphs. Int J Syst Evol Microbiol 51:1593–1606
   [Google Scholar]
6. de Hoog G. S., Gerrits van den Ende A. H. G. 1998; Molecular diagnostics of clinical strains of filamentous basidiomycetes. Mycoses 41:183–189 [CrossRef]
   [Google Scholar]
7. de Hoog G. S., Smith M. Th. 2004; Ribosomal gene phylogeny and species delimitation in Geotrichum and its teleomorphs. Stud Mycol 50:489–515
   [Google Scholar]
8. de Hoog G. S., Smith M. Th. 2011a; Galactomyces Redhead & Malloch (1977). In The Yeasts, a Taxonomic Study, 5th edn. pp. 413–420 Edited by Kurtzman C. P., Fell J. W., Boekhout T. Amsterdam; Elsevier: [View Article]
   [Google Scholar]
9. de Hoog G. S., Smith M. Th. 2011a; Geotrichum Link: Fries (1832). In The Yeasts, a Taxonomic Study, 5th edn. pp. 1279–1286 Edited by Kurtzman C. P., Fell J. W., Boekhout T. Amsterdam; Elsevier: [View Article]
   [Google Scholar]
10. de Hoog G. S., Smith M. Th., Guého E. 1986; A revision of the genus Geotrichum and its teleomorphs. Stud Mycol 29:1–131
    [Google Scholar]
11. Groenewald M., Daniel H.-M., Robert V., Poot G. A., Smith M. Th. 2008; Polyphasic re-examination of Debaryomyces hansenii strains and reinstatement of D. hansenii, D. fabryi and D. subglobosus . Persoonia 21:17–27 [View Article][PubMed]
    [Google Scholar]
12. Guého E., Tredick J., Phaff H. J. 1985; DNA relatedness among species of Geotrichum and Dipodascus . Can J Bot 63:961–966
    [Google Scholar]
13. Hawksworth D. L., Crous P. W., Redhead S. A., Reynolds D. R., Samson R. A., Seifert K. A., Taylor J. W., Wingfield M. J., Abaci O. other authors 2011; The Amsterdam declaration on fungal nomenclature. IMA Fungus 2:105–112 [View Article][PubMed]
    [Google Scholar]
14. Kaewwichian R., Yongmanitchai W., Srisuk N., Fujiyama K., Limtong S. 2010; Geotrichum siamensis sp. nov. and Geotrichum phurueaensis sp. nov., two asexual arthroconidial yeast species isolated in Thailand. FEMS Yeast Res 10:214–220 [View Article][PubMed]
    [Google Scholar]
15. Katoh K., Misawa K., Kuma K., Miyata T. 2002; MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30:3059–3066 [View Article][PubMed]
    [Google Scholar]
16. Kauserud H., Schumacher T. 2003; Ribosomal DNA variation, recombination and inheritance in the basidiomycete Trichaptum abietinum: implications for reticulate evolution. Heredity (Edinb) 91:163–172 [View Article][PubMed]
    [Google Scholar]
17. Knapp S., McNeill J., Turland N. J. 2011; Changes to publication requirements made at the XVIII International Botanical Congress in Melbourne – what does e-publication mean for you?. PhytoKeys 6:5–11 [View Article][PubMed]
    [Google Scholar]
18. Knutsen A. K., Robert V., Poot G. A., Epping W., Figge M., Holst-Jensen A., Skaar I., Smith M. Th. 2007; Polyphasic re-examination of Yarrowia lipolytica strains and the description of three novel Candida species: Candida oslonensis sp. nov., Candida alimentaria sp. nov. and Candida hollandica sp. nov.. Int J Syst Evol Microbiol 57:2426–2435 [View Article][PubMed]
    [Google Scholar]
19. Kurtzman C. P., Robnett C. J. 1995; Molecular relationships among hyphal ascomycetous yeasts and yeastlike taxa. Can J Bot 73:Suppl. 1824–830 [View Article]
    [Google Scholar]
20. Kurtzman C. P., Robnett C. J. 1998; Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 73:331–371 [View Article][PubMed]
    [Google Scholar]
21. Lachance M.-A., Rosa C. A., Starmer W. T., Schlag-Edler B., Barker J. S. F., Bowles J. M. 1998; Metschnikowia continentalis var. borealis, Metschnikowia continentalis var. continentalis, and Metschnikowia hibisci, new heterothallic haploid yeasts from ephemeral flowers and associated insects. Can J Microbiol 44:279–288 [View Article]
    [Google Scholar]
22. Lachance M.-A., Daniel H. M., Meyer W., Prasad G. S., Gautam S. P., Boundy-Mills K. 2003; The D1/D2 domain of the large-subunit rDNA of the yeast species Clavispora lusitaniae is unusually polymorphic. FEMS Yeast Res 4:253–258 [View Article][PubMed]
    [Google Scholar]
23. Naumov G. I. 1987; Genetic basis for classification and identification of the ascomycetous yeasts. Stud Mycol 30:469–475
    [Google Scholar]
24. Naumov G. I., Naumova E. S., Kondratieva V. I., Bulat S. A., Mironenko N. V., Mendonca-Hagler L. C., Hagler A. N. 1997; Genetic and molecular delineation of three sibling species in the Hansenula polymorpha complex. Syst Appl Microbiol 20:50–56 [View Article]
    [Google Scholar]
25. Nielsen D. S., Jakobsen M., Jespersen L. 2010; Candida halmiae sp. nov., Geotrichum ghanense sp. nov. and Candida awuaii sp. nov., isolated from Ghanaian cocoa fermentations. Int J Syst Evol Microbiol 60:1460–1465 [View Article][PubMed]
    [Google Scholar]
26. Pimenta R. S., Alves P. D. D., Corrêa A. Jr, Lachance M. A., Prasad G. S., Rajaram, Sinha B. R., Rosa C. A. 2005; Geotrichum silvicola sp. nov., a novel asexual arthroconidial yeast species related to the genus Galactomyces . Int J Syst Evol Microbiol 55:497–501 [View Article][PubMed]
    [Google Scholar]
27. Pitt J. I., Miller M. W. 1970; Speciation in the yeast genus Metschnikowia . Antonie van Leeuwenhoek 36:357–381 [View Article][PubMed]
    [Google Scholar]
28. Redhead S. A., Malloch D. W. 1977; The Endomycetaceae: new concepts, new taxa. Can J Bot 55:1701–1711 [View Article]
    [Google Scholar]
29. Rossman A. Y., Seifert K. A. 2011 Phylogenetic revision of taxonomic concepts in the Hypocreales and other Ascomycota – a tribute to Gary J. Samuels (Stud Mycol 68).
30. Smith M. Th., de Cock A. W., Poot G. A., Steensma H. Y. 1995; Genome comparisons in the yeastlike fungal genus Galactomyces Redhead et Malloch. Int J Syst Bacteriol 45:826–831 [View Article][PubMed]
    [Google Scholar]
31. Smith M. Th., Robert V., Poot G. A., Epping W., de Cock A. W. A. M. 2005; Taxonomy and phylogeny of the ascomycetous yeast genus Zygoascus, with proposal of Zygoascus meyerae sp. nov. and related anamorphic varieties. Int J Syst Evol Microbiol 55:1353–1363 [View Article][PubMed]
    [Google Scholar]
32. Suh S.-O., Blackwell M. 2006; Three new asexual arthroconidial yeasts, Geotrichum carabidarum sp. nov., Geotrichum histeridarum sp. nov., and Geotrichum cucujoidarum sp. nov., isolated from the gut of insects. Mycol Res 110:220–228 [View Article][PubMed]
    [Google Scholar]
33. Sulo P., Laurencík M., Poláková S., Minárik G., Sláviková E. 2009; Geotrichum bryndzae sp. nov., a novel asexual arthroconidial yeast species related to the genus Galactomyces . Int J Syst Evol Microbiol 59:2370–2374 [View Article][PubMed]
    [Google Scholar]
34. Swofford D. L. 2003 paup*: phylogenetic analysis using parsimony (*and other methods), version 4. Sunderland, MA: Sinauer Associates.
35. Ueda-Nishimura K., Mikata K. 2000; Two distinct 18S rRNA secondary structures in Dipodascus (Hemiascomycetes). Microbiology 146:1045–1051[PubMed]
    [Google Scholar]
36. Vilgalys R., Hester M. 1990; Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. J Bacteriol 172:4238–4246[PubMed]
    [Google Scholar]
37. von Arx J. A. 1977; Notes on Dipodascus, Endomyces and Geotrichum with the description of two new species. Antonie van Leeuwenhoek 43:333–340 [CrossRef]
    [Google Scholar]
38. Weijman A. C. M. 1979; Carbohydrate composition and taxonomy of Geotrichum, Trichosporon and allied genera. Antonie van Leeuwenhoek 45:119–127 [View Article][PubMed]
    [Google Scholar]
39. White T. J., Bruns T., Lee S., Taylor J. 1990; Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenics. In PCR Protocols: a Guide to Methods and Applications pp. 315–322 Edited by Innis M., Gelfand D., Sninsky J., White T. New York: Academic Press;
    [Google Scholar]
40. Wuczkowski M., Bond Ch., Prillinger H. 2006; Geotrichum vulgare sp. nov., a novel asexual arthroconidial yeast. Int J Syst Evol Microbiol 56:301–303 [View Article][PubMed]
    [Google Scholar]
41. Yarrow D. 1998; Methods for the isolation, maintenance and identification of yeasts. In The Yeasts, a Taxonomic Study, 4th edn. pp. 77–100 Edited by Kurtzman C. P., Fell J. W. Amsterdam: Elsevier; [View Article]
    [Google Scholar]