Pedobacter ginsengiterrae sp. nov., isolated from soil of a ginseng field

References

1. Bartholomew J. W., Finkelstein H. ( 1958 ). Relationship of cell wall staining to gram differentiation. . J Bacteriol 75, 77–84.[PubMed]
   [Google Scholar]
2. Bauer A. W., Kirby W. M. M., Sherris J. C., Turck M. ( 1966 ). Antibiotic susceptibility testing by a standardized single disk method. . Am J Clin Pathol 45, 493–496.[PubMed]
   [Google Scholar]
3. Bernardet J.-F., Nakagawa Y., Holmes B. Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes ( 2002 ). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. . Int J Syst Evol Microbiol 52, 1049–1070. [View Article] [PubMed]
   [Google Scholar]
4. Christensen W. B. ( 1946 ). Urea decomposition as a means of differentiating Proteus and paracolon cultures from each other and from Salmonella and Shigella types. . J Bacteriol 52, 461–466.[PubMed]
   [Google Scholar]
5. Chun J., Lee J. H., Jung Y., Kim M., Kim S., Kim B. K., Lim Y. W. ( 2007 ). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. . Int J Syst Evol Microbiol 57, 2259–2261. [View Article] [PubMed]
   [Google Scholar]
6. Collins M. D. ( 1985 ). Isoprenoid quinone analysis in classification and identification. . In Chemical Methods in Bacterial Systematics, pp. 267–287. Edited by Goodfellow M., Minnikin D. E. . London:: Academic Press;.
   [Google Scholar]
7. Cowan S. T., Steel K. J. ( 1974 ). Manual for the Identification of Medical Bacteria. Cambridge:: Cambridge University Press;.
   [Google Scholar]
8. Ezaki T., Hashimoto Y., Yabuuchi E. ( 1989 ). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. . Int J Syst Bacteriol 39, 224–229. [View Article]
   [Google Scholar]
9. Felsenstein J. ( 1985 ). Confidence limits on phylogenies: an approach using the bootstrap. . Evolution 39, 783–791. [View Article]
   [Google Scholar]
10. Gallego V., García M. T., Ventosa A. ( 2006 ). Pedobacter aquatilis sp. nov., isolated from drinking water, and emended description of the genus Pedobacter . . Int J Syst Evol Microbiol 56, 1853–1858. [View Article] [PubMed]
    [Google Scholar]
11. Gordon N. S., Valenzuela A., Adams S. M., Ramsey P. W., Pollock J. L., Holben W. E., Gannon J. E. ( 2009 ). Pedobacter nyackensis sp. nov., Pedobacter alluvionis sp. nov. and Pedobacter borealis sp. nov., isolated from Montana flood-plain sediment and forest soil. . Int J Syst Evol Microbiol 59, 1720–1726. [View Article] [PubMed]
    [Google Scholar]
12. Hall T. A. ( 1999 ). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. . Nucleic Acids Symp Ser 41, 95–98.
    [Google Scholar]
13. Hwang C. Y., Choi D. H., Cho B. C. ( 2006 ). Pedobacter roseus sp. nov., isolated from a hypertrophic pond, and emended description of the genus Pedobacter . . Int J Syst Evol Microbiol 56, 1831–1836. [View Article] [PubMed]
    [Google Scholar]
14. Kim M. K., Im W.-T., Ohta H., Lee M., Lee S.-T. ( 2005 ). Sphingopyxis granuli sp. nov., a β-glucosidase-producing bacterium in the family Sphingomonadaceae in α-4 subclass of the Proteobacteria . . J Microbiol 43, 152–157.[PubMed]
    [Google Scholar]
15. Kimura M. ( 1983 ). The Neutral Theory of Molecular Evolution Cambridge. Cambridge:: University Press;. [View Article]
    [Google Scholar]
16. Kumar S., Tamura K., Jakobsen I. B., Nei M. ( 2001 ). mega2: molecular evolutionary genetics analysis software. . Bioinformatics 17, 1244–1245. [View Article] [PubMed]
    [Google Scholar]
17. Kwon S.-W., Kim B.-Y., Lee K.-H., Jang K.-Y., Seok S.-J., Kwon J.-S., Kim W.-G., Weon H.-Y. ( 2007 ). Pedobacter suwonensis sp. nov., isolated from the rhizosphere of Chinese cabbage (Brassica campestris). . Int J Syst Evol Microbiol 57, 480–484. [View Article] [PubMed]
    [Google Scholar]
18. Lane D. J. ( 1991 ). 16S/23S rRNA sequencing. . In Nucleic Acid Techniques in Bacterial Systematics, pp. 115–176. Edited by Stackebrandt E., Goodfellow M. . Chichester:: Wiley;.
    [Google Scholar]
19. Lee H. G., Kim S. G., Im W. T., Oh H. M., Lee S. T. ( 2009 ). Pedobacter composti sp. nov., isolated from compost. . Int J Syst Evol Microbiol 59, 345–349. [View Article] [PubMed]
    [Google Scholar]
20. Margesin R., Shivaji S. ( 2011 ). Genus II. Pedobacter Steyn et al. 1998. . In Bergey’s Manual of Systematic Bacteriology, , 2nd edn., vol. 4, pp. 339–347. Edited by Whitman W. . Baltimore:: The Williams & Wilkins Co;.
    [Google Scholar]
21. Margesin R., Spröer C., Schumann P., Schinner F. ( 2003 ). Pedobacter cryoconitis sp. nov., a facultative psychrophile from alpine glacier cryoconite. . Int J Syst Evol Microbiol 53, 1291–1296. [View Article] [PubMed]
    [Google Scholar]
22. Mesbah M., Premachandran U., Whitman W. B. ( 1989 ). Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. . Int J Syst Bacteriol 39, 159–167. [View Article]
    [Google Scholar]
23. Minnikin D. E., Patel P. V., Alshamaony L., Goodfellow M. ( 1977 ). Polar lipid composition in the classification of Nocardia and related bacteria. . Int J Syst Bacteriol 27, 104–117. [View Article]
    [Google Scholar]
24. Roh S. W., Quan Z.-X., Nam Y.-D., Chang H.-W., Kim K.-H., Kim M.-K., Im W.-T., Jin L., Kim S.-H. et al. ( 2008 ). Pedobacter agri sp. nov., from soil. . Int J Syst Evol Microbiol 58, 1640–1643. [View Article] [PubMed]
    [Google Scholar]
25. Saitou N., Nei M. ( 1987 ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. . Mol Biol Evol 4, 406–425.[PubMed]
    [Google Scholar]
26. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
27. Skerman V. B. D. ( 1967 ). A Guide to the Identification of the Genera of Bacteria, , 2nd edn.. Baltimore:: Williams & Wilkins;.
    [Google Scholar]
28. Steyn P. L., Segers P., Vancanneyt M., Sandra P., Kersters K., Joubert J. J. ( 1998 ). Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. Proposal of the family Sphingobacteriaceae fam. nov. . Int J Syst Bacteriol 48, 165–177. [View Article] [PubMed]
    [Google Scholar]
29. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. ( 1997 ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. . Nucleic Acids Res 25, 4876–4882. [View Article] [PubMed]
    [Google Scholar]
30. Vanparys B., Heylen K., Lebbe L., De Vos P. ( 2005 ). Pedobacter caeni sp. nov., a novel species isolated from a nitrifying inoculum. . Int J Syst Evol Microbiol 55, 1315–1318. [View Article] [PubMed]
    [Google Scholar]
31. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. et al. ( 1987 ). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. . Int J Syst Bacteriol 37, 463–464. [View Article]
    [Google Scholar]
32. Yoon J.-H., Lee M.-H., Kang S.-J., Park S.-Y., Oh T.-K. ( 2006 ). Pedobacter sandarakinus sp. nov., isolated from soil. . Int J Syst Evol Microbiol 56, 1273–1277. [View Article] [PubMed]
    [Google Scholar]
33. Yoon J.-H., Kang S.-J., Oh T.-K. ( 2007 ). Pedobacter terrae sp. nov., isolated from soil. . Int J Syst Evol Microbiol 57, 2462–2466. [View Article] [PubMed]
    [Google Scholar]