1887

Abstract

A Gram-negative, obligately anaerobic, non-spore-forming, long rod-shaped bacterium strain P2 was isolated from the offshore mangrove sediment of the South China Sea. Growth was observed at between 22 and 39 °C, with an optimum at 35 °C. The pH range for growth was 5.0–8.5, with an optimum around pH 7.0–7.5. Salt tolerance was determined between 0.2 and 3.5 % (w/v), optimum at 0.5–1.0 %. Catalase and oxidase activities were negative. Strain P2 utilized cysteine, lactate, pyruvate, yeast extract or H/CO+acetate as electron donors, and sulfate or sulfite as electron acceptors. Metabolism was strictly fermentative. The main organic fermentation products were propionate, acetate and succinate. Phylogenetic analyses based on 16S rRNA gene sequences showed that strain P2 formed a distinct evolutionary lineage within the family . Strain P2 was most closely related to members of the genera (92.0 % 16S rRNA gene sequence similarity), (91.7 %) and (89.9 %) of the family . The DNA G+C content of the novel strain was 44.2±1.0 mol%. The dominant fatty acids of strain P2 were iso-C (33.5 %), anteiso-C (18.9 %), C (5.4 %), C 3-OH (7.7 %) and iso-C 3-OH (13.3 %). The respiratory quinone was menaquinone 7 (100 % of total quinone) and the major polar lipid was phosphatidylethanolamine. Strain P2 was distinguishable from members of phylogenetically related genera by differences in several phenotypic properties. On the basis of phylogenetic, phenotypic and physiological evidence, a novel genus, , is proposed to harbour strain P2 ( = CGMCC 1.5167 = DSM 24214) which is described as the type strain of a novel species, gen. nov., sp. nov.

Funding
This study was supported by the:
  • Marine Scientific Research Foundation for Pubic Sector Program (Award 201105027 and 200805050)
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2012-08-01
2024-12-06
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References

  1. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [View Article][PubMed]
    [Google Scholar]
  2. Ausubel F. M., Brent R., Kingston R. E., Moore D. D., Seidman J. G., Smith J. A., Struhl K. (editors) 1995 Short Protocols in Molecular Biology: a Compendium of Methods from Current Protocols in Molecular Biology, 3rd edn. New York: Wiley;
    [Google Scholar]
  3. Barbeyron T., L’Haridon S., Michel G., Czjzek M. 2008; Mariniflexile fucanivorans sp. nov., a marine member of the Flavobacteriaceae that degrades sulphated fucans from brown algae. Int J Syst Evol Microbiol 58:2107–2113 [View Article][PubMed]
    [Google Scholar]
  4. Chang B. V., Lu Z. J., Yuan S. Y. 2009; Anaerobic degradation of nonylphenol in subtropical mangrove sediments. J Hazard Mater 165:162–167 [View Article][PubMed]
    [Google Scholar]
  5. Chun J., Lee J. H., Jung Y., Kim M., Kim S., Kim B. K., Lim Y. W. 2007; EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259–2261 [View Article][PubMed]
    [Google Scholar]
  6. Cord-Ruwisch R. 1985; A quick method for the determination of dissolved and precipitated sulfides in cultures of sulfate-reducing bacteria. J Microbiol Methods 4:33–36 [View Article]
    [Google Scholar]
  7. Cowan S. T., Steel K. J. 1993 Manual for the Identification of Medical Bacteria, 3rd edn. Edited by Barrow G. I., Feltham R. K. A. Cambridge: Cambridge University Press;
    [Google Scholar]
  8. Denger K., Warthmann R., Ludwig W., Schink B. 2002; Anaerophaga thermohalophila gen. nov., sp. nov., a moderately thermohalophilic, strictly anaerobic fermentative bacterium. Int J Syst Evol Microbiol 52:173–178[PubMed]
    [Google Scholar]
  9. Dittmer J. C., Lester R. L. 1964; A simple specific spray for the detection of phospholipids on thin-layer chromatograms. J Lipid Res 15:126–127[PubMed]
    [Google Scholar]
  10. Holmes D. E., Nevin K. P., Woodard T. L., Peacock A. D., Lovley D. R. 2007; Prolixibacter bellariivorans gen. nov., sp. nov., a sugar-fermenting, psychrotolerant anaerobe of the phylum Bacteroidetes, isolated from a marine-sediment fuel cell. Int J Syst Evol Microbiol 57:701–707 [View Article][PubMed]
    [Google Scholar]
  11. Li M. S., Lee S. Y. 1997; Mangroves of China: a brief review. For Ecol Manage 96:241–259 [View Article]
    [Google Scholar]
  12. Liao Q. Y., Li J., Zhang J. H., Li M., Lu Y., Xu R. L. 2009; An ecological analysis of soil sarcodina at Dongzhaigang mangrove in Hainan Island, China. Eur J Soil Biol 45:214–219 [View Article]
    [Google Scholar]
  13. Lin P., Fu Q. 1995 Environmental Ecology and Economic Utilization of Mangrove in China Beijing: Higher Education Press;
    [Google Scholar]
  14. Ludwig W., Euzeby J., Whitman W. B. 2010; The road map of volume 4 phyla, draft taxonomic outline of the Bacteroidetes, Planctomycetes, Chlamydiae, Spirochaetes, Fibrobacteres, Fusobacteria, Acidobacteria, Verrucomicrobia, Dictyoglomi, and Gemmatimonadetes . In Bergey’s Manual of Systematic Bacteriology, 2nd edn. vol. 4 pp. 1–24 New York: Springer;
    [Google Scholar]
  15. Mesbah M., Whitman W. B. 1989; Measurement of deoxyguanosine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr A 479:297–306 [View Article][PubMed]
    [Google Scholar]
  16. Nakagawa Y., Yamasato K. 1996; Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov.: phylogenetic analysis of the FlavobacteriumCytophaga complex. Int J Syst Bacteriol 46:599–603 [View Article]
    [Google Scholar]
  17. Reichenbach H. 1992; The order Cytophagales . In The Prokaryotes, 2nd edn. vol. 4 pp. 3631–3675 Edited by Balows A., Truper H. G., Dworkin M., Harder W., Schleifer K.-H. Berlin, Heidelberg, New York: Springer; [CrossRef]
    [Google Scholar]
  18. Reichenbach H., Kleinig H., Achenbach H. 1974; The pigments of Flexibacter elegans. Novel and chemosystematically useful compounds. Arch Microbiol 101:131–144 [View Article][PubMed]
    [Google Scholar]
  19. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
    [Google Scholar]
  20. Sasser M. 1997 Identification of bacteria by gas chromatography of cellular fatty acids. (Technical note 101) MIDI Sherlock Microbial Identification System, Newark, DE: MIDi Inc.
  21. Syn C. K., Swarup S. 2000; A scalable protocol for the isolation of large-sized genomic DNA within an hour from several bacteria. Anal Biochem 278:86–90 [View Article][PubMed]
    [Google Scholar]
  22. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [View Article][PubMed]
    [Google Scholar]
  23. Uchino Y., Hamada T., Yokota A. 2002; Proposal of Pseudorhodobacter ferrugineus gen nov, comb nov, for a non-photosynthetic marine bacterium, Agrobacterium ferrugineum, related to the genus Rhodobacter . J Gen Appl Microbiol 48:309–319 [View Article][PubMed]
    [Google Scholar]
  24. Weisburg W. G., Barns S. M., Pelletier D. A., Lane D. J. 1991; 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173:697–703[PubMed]
    [Google Scholar]
  25. Yassin A. F., Haggenel B., Budzikiewicz H., Schaal K. P. 1993; Fatty acid and polar lipid composition of the genus Amycolatopsis: Application of fast atom bombardment-mass spectrometry to structure analysis of underivatized phospholipids. Int J Syst Bacteriol 43:414–420 [View Article]
    [Google Scholar]
  26. Yin B., Gu J. D., Wan N. S. 2005; Degradation of indole by enrichment culture and Pseudomonas aeruginosa Gs isolated from mangrove sediment. Int Biodeter Biodegr 56:243–248 [View Article]
    [Google Scholar]
  27. Zhang Y. B., Zhuang T. C., Yang Z. W., Lin P. 2001; Microbial study of mangrove soil at Dongzhai harbor in Hainan. Chin J Ecol 20:63–64
    [Google Scholar]
  28. Zhilina T. N., Appel R., Probian C., Brossa E. L., Harder J., Widdel F., Zavarzin G. A. 2004; Alkaliflexus imshenetskii gen. nov. sp. nov., a new alkaliphilic gliding carbohydrate-fermenting bacterium with propionate formation from a soda lake. Arch Microbiol 182:244–253 [View Article][PubMed]
    [Google Scholar]
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