1887

Abstract

The taxonomic position of four heterotrophic, aerobic, Gram-negative, non-motile and moderately halophilic marine bacteria, isolated from the green alga (Kütz) Kornm, was established. 16S rDNA sequence analysis indicated that the strains studied are members of the family , in which they form a distinct lineage. On the basis of phenotypic, chemotaxonomic, genotypic and phylogenetic data, the novel bacteria were classified as gen. nov., sp. nov. The type strain is KMM 3909 (=KCTC 12089=CCUG 47092).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.02626-0
2003-11-01
2019-10-17
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/53/6/ijs531967.html?itemId=/content/journal/ijsem/10.1099/ijs.0.02626-0&mimeType=html&fmt=ahah

References

  1. Akagawa-Matsushita, M., Itoh, T., Katayama, Y., Kuraishi, H. & Yamasato, K. ( 1992; ). Isoprenoid quinone composition of some marine Alteromonas, Marinomonas, Deleya, Pseudomonas and Shewanella species. J Gen Microbiol 138, 2275–2281.[CrossRef]
    [Google Scholar]
  2. Bano, N. & Hollibaugh, J. T. ( 2002; ). Phylogenetic composition of bacterioplankton assemblages from the Arctic Ocean. Appl Environ Microbiol 68, 505–518.[CrossRef]
    [Google Scholar]
  3. Barbeyron, T., L'Haridon, S., Corre, E., Kloareg, B. & Potin, P. ( 2001; ). Zobellia galactanovorans gen. nov., sp. nov., a marine species of Flavobacteriaceae isolated from a red alga, and classification of [Cytophaga] uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Zobellia uliginosa gen. nov., comb. nov. Int J Syst Evol Microbiol 51, 985–997.[CrossRef]
    [Google Scholar]
  4. Bernardet, J.-F., Nakagawa, Y. & Holmes, B. ( 2002; ). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049–1070.[CrossRef]
    [Google Scholar]
  5. Bowman, J. P. ( 2000; ). Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861–1868.
    [Google Scholar]
  6. Bowman, J. P. & Nichols, D. S. ( 2002; ). Aequorivita gen. nov., a member of the family Flavobacteriaceae isolated from terrestrial and marine Antarctic habitats. Int J Syst Evol Microbiol 52, 1533–1541.[CrossRef]
    [Google Scholar]
  7. Bowman, J. P., McCammon, S. A., Brown, J. L., Nichols, P. D. & McMeekin, T. A. ( 1997; ). Psychroserpens burtonensis gen. nov., sp. nov., and Gelidibacter algens gen. nov., sp. nov., psychrophilic bacteria isolated from Antarctic lacustrine and sea ice habitats. Int J Syst Bacteriol 47, 670–677.[CrossRef]
    [Google Scholar]
  8. Bowman, J. P., McCammon, S. A., Lewis, T., Skerratt, J. H., Brown, J. L., Nichols, D. S. & McMeekin, T. A. ( 1998; ). Psychroflexus torquis gen. nov., sp. nov., a psychrophilic species from Antarctic sea ice, and reclassification of Flavobacterium gondwanense ( Dobson et al. 1993 ) as Psychroflexus gondwanense gen. nov., comb. nov. Microbiology 144, 1601–1609.[CrossRef]
    [Google Scholar]
  9. Brambilla, E., Hippe, H., Hagelstein, A., Tindall, B. J. & Stackebrandt, E. ( 2001; ). 16S rDNA diversity of cultured and uncultured prokaryotes of a mat sample from Lake Fryxell, McMurdo Dry Valleys, Antarctica. Extremophiles 5, 23–33.[CrossRef]
    [Google Scholar]
  10. Britschgi, T. B. & Giovannoni, S. J. ( 1991; ). Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing. Appl Environ Microbiol 57, 1707–1713.
    [Google Scholar]
  11. Bruns, A., Rohde, M. & Berthe-Corti, L. ( 2001; ). Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 51, 1997–2006.[CrossRef]
    [Google Scholar]
  12. De Ley, J., Cattoir, H. & Reynaerts, A. ( 1970; ). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133–142.[CrossRef]
    [Google Scholar]
  13. Dobson, S. J., Colwell, R. R., McMeekin, T. A. & Franzmann, P. D. ( 1993; ). Direct sequencing of the polymerase chain reaction-amplified 16S rRNA gene of Flavobacterium gondwanense sp. nov. and Flavobacterium salegens sp. nov., two new species from a hypersaline Antarctic lake. Int J Syst Bacteriol 43, 77–83.[CrossRef]
    [Google Scholar]
  14. Felsenstein, J. ( 1993; ). phylip (phylogeny inference package), version 3.5c. Department of Genetics, University of Washington, Seattle, USA.
  15. Fitch, W. M. & Margoliash, E. ( 1967; ). Construction of phylogenetic trees. Science 155, 279–284.[CrossRef]
    [Google Scholar]
  16. Fuhrman, J. A., McCallum, K. & Davis, A. A. ( 1993; ). Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans. Appl Environ Microbiol 59, 1294–1302.
    [Google Scholar]
  17. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors) ( 1994; ). Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
  18. Glöckner, F. O., Fuchs, B. M. & Amann, R. ( 1999; ). Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl Environ Microbiol 65, 3721–3726.
    [Google Scholar]
  19. Gosink, J. J., Woese, C. R. & Staley, J. T. ( 1998; ). Polaribacter gen nov., with three new species, P. irgensii sp. nov., P. franzmannii sp. nov. and P. filamentus sp. nov., gas vacuolate polar marine bacteria of the Cytophaga–Flavobacterium–Bacteroides group and reclassification of ‘Flectobacillus glomeratus’ as Polaribacter glomeratus comb. nov. Int J Syst Bacteriol 48, 223–235.[CrossRef]
    [Google Scholar]
  20. Ivanova, E. P., Nedashkovskaya, O. I., Chun, J. & 7 other authors ( 2001; ). Arenibacter gen. nov., new genus of the family Flavobacteriaceae and description of new species, Arenibacter latericius sp. nov. Int J Syst Evol Microbiol 51, 1987–1995.[CrossRef]
    [Google Scholar]
  21. Johansen, J. E., Nielsen, P. & Sjøholm, C. ( 1999; ). Description of Cellulophaga baltica gen. nov., sp. nov. and Cellulophaga fucicola gen. nov., sp. nov. and reclassification of [Cytophaga] lytica to Cellulophaga lytica gen. nov., comb. nov. Int J Syst Bacteriol 49, 1231–1240.[CrossRef]
    [Google Scholar]
  22. Jukes, T. H. & Cantor, C. R. ( 1969; ). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21–132. Edited by H. N. Munro. New York: Academic Press.
  23. Kim, S. B., Falconer, C., Williams, E. & Goodfellow, M. ( 1998; ). Streptomyces thermocarboxydovorans sp. nov. and Streptomyces thermocarboxydus sp. nov., two moderately thermophilic carboxydotrophic species from soil. Int J Syst Bacteriol 48, 59–68.[CrossRef]
    [Google Scholar]
  24. Kirchman, D. L. ( 2002; ). The ecology of CytophagaFlavobacteria in aquatic environments. FEMS Microbiol Ecol 39, 91–100.
    [Google Scholar]
  25. Lemos, M. L., Toranzo, A. E. & Barja, J. L. ( 1985; ). Modified medium for the oxidation-fermentation test in the identification of marine bacteria. Appl Environ Microbiol 49, 1541–1543.
    [Google Scholar]
  26. Marmur, J. ( 1961; ). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208–218.[CrossRef]
    [Google Scholar]
  27. Marmur, J. & Doty, P. ( 1962; ). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109–118.[CrossRef]
    [Google Scholar]
  28. McCammon, S. A. & Bowman, J. P. ( 2000; ). Taxonomy of Antarctic Flavobacterium species: description of Flavobacterium gillisiae sp. nov., Flavobacterium tegetincola sp. nov. and Flavobacterium xanthum sp. nov., nom. rev. and reclassification of [Flavobacterium] salegens as Salegentibacter salegens gen. nov., comb. nov. Int J Syst Evol Microbiol 50, 1055–1063.[CrossRef]
    [Google Scholar]
  29. Nedashkovskaya, O. I., Suzuki, M., Vysotskii, M. V. & Mikhailov, V. V. ( 2003; ). Reichenbachia agariperforans gen. nov., sp. nov., a novel marine bacterium in the phylum CytophagaFlavobacteriumBacteroides. Int J Syst Evol Microbiol 53, 81–85.[CrossRef]
    [Google Scholar]
  30. Reichenbach, H. ( 1989; ). Order Cytophagales Leadbetter 1974, 99AL. In Bergey's Manual of Systematic Bacteriology, vol. 3, pp. 2011–2013. Edited by J. T. Staley, M. P. Bryant, N. Pfennig & J. C. Holt. Baltimore: Williams & Wilkins.
  31. Saitou, N. & Nei, M. ( 1987; ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425.
    [Google Scholar]
  32. Suzuki, M. T., Rappé, M. S., Haimberger, Z. W., Winfield, H., Adair, N., Ströbel, J. & Giovannoni, S. J. ( 1997; ). Bacterial diversity among small-subunit rRNA gene clones and cellular isolates from the same seawater sample. Appl Environ Microbiol 63, 983–989.
    [Google Scholar]
  33. Suzuki, M., Nakagawa, Y., Harayama, S. & Yamamoto, S. ( 2001; ). Phylogenetic analysis and taxonomic study of marine Cytophaga-like bacteria: proposal for Tenacibaculum gen. nov. with Tenacibaculum maritimum comb. nov. and Tenacibaculum ovolyticum comb. nov., and description of Tenacibaculum mesophilum sp. nov. and Tenacibaculum amylolyticum sp. nov. Int J Syst Evol Microbiol 51, 1639–1652.[CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.02626-0
Loading
/content/journal/ijsem/10.1099/ijs.0.02626-0
Loading

Data & Media loading...

Supplements

vol. , part 6, pp. 1967 – 1971

Micrograph showing rod-shaped cells of . Bar, 1 µm.



IMAGE

Most Cited This Month

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error