1887

Abstract

On the basis of nucleotide divergences in the D1/D2 domain of the 26S rRNA gene and the internal transcribed spacers (ITS) domain of the rRNA gene, five novel yeast species, sp. nov. (CBS 8565  = JCM 17246), sp. nov. (CBS 8584  = JCM 17242), sp. nov. (CBS 8533  = JCM 17247), sp. nov. (CBS 8580  = JCM 17243) and sp. nov. (CBS 8586  = JCM 17241), isolated from plants in Thailand and Guyana, are proposed in this study.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.026062-0
2011-08-01
2020-01-26
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/61/8/2015.html?itemId=/content/journal/ijsem/10.1099/ijs.0.026062-0&mimeType=html&fmt=ahah

References

  1. Billon-Grand G. . ( 1989; ). A new ascosporogenous yeast genus: Yamadazyma gen. nov. . Mycotaxon 35:, 201–204.
    [Google Scholar]
  2. de Hoog G. S. , Gerrits van den Ende A. H. G. . ( 1998; ). Molecular diagnostics of clinical strains of filamentous basidiomycetes. . Mycoses 41:, 183–189. [CrossRef] [PubMed]
    [Google Scholar]
  3. Ganter P. F. . ( 2006; ). Yeast and invertebrate associations. . In The yeast handbook, Biodiversity and ecophysiology of yeasts, pp. 303–370. Edited by Rosa C. A. , Peter G. . . Heidelberg:: Springer;. [CrossRef]
    [Google Scholar]
  4. Groenewald M. , Daniel H.-M. , Robert V. , Poot G. A. , Smith M. T. . ( 2008; ). Polyphasic re-examination of Debaryomyces hansenii strains and reinstatement of D. hansenii, D. fabryi and D. subglobosus . . Persoonia 21:, 17–27.[PubMed] [CrossRef]
    [Google Scholar]
  5. Katoh K. , Misawa K. , Kuma K. , Miyata T. . ( 2002; ). mafft: a novel method for rapid multiple sequence alignment based on fast Fourier transform. . Nucleic Acids Res 30:, 3059–3066. [CrossRef] [PubMed]
    [Google Scholar]
  6. Knutsen A. K. , Robert V. , Poot G. A. , Epping W. , Figge M. , Holst-Jensen A. , Skaar I. , Smith M. T. . ( 2007; ). Polyphasic re-examination of Yarrowia lipolytica strains and the description of three novel Candida species: Candida oslonensis sp. nov., Candida alimentaria sp. nov. and Candida hollandica sp. nov.. Int J Syst Evol Microbiol 57:, 2426–2435. [CrossRef] [PubMed]
    [Google Scholar]
  7. Kreger-van Rij N. J. W. . ( 1970; ). Debaryomyces Lodder et Kreger-van Rij nom. conserv.. In The Yeasts, , 2nd edn., pp. 129–156. Edited by Ladder J. . . Amsterdam:: North Holland Publishing Co;.
    [Google Scholar]
  8. Kurtzman C. P. , Robnett C. J. . ( 1998; ). Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. . Antonie van Leeuwenhoek 73:, 331–371. [CrossRef] [PubMed]
    [Google Scholar]
  9. Kurtzman C. P. , Robnett C. J. , Basehoar-Powers E. . ( 2008; ). Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene sequence analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov.. FEMS Yeast Res 8:, 939–954. [CrossRef] [PubMed]
    [Google Scholar]
  10. Lachance M.-A. , Bowles J. M. , Starmer W. T. , Barker J. S. F. . ( 1999; ). Kodamaea kakaduensis and Candida tolerans, two new ascomycetous yeast species from Australian Hibiscus flowers. . Can J Microbiol 45:, 172–177.[PubMed] [CrossRef]
    [Google Scholar]
  11. Lachance M.-A. , Daniel H. M. , Meyer W. , Prasad G. S. , Gautam S. P. , Boundy-Mills K. . ( 2003; ). The D1/D2 domain of the large-subunit rDNA of the yeast species Clavispora lusitaniae is unusually polymorphic. . FEMS Yeast Res 4:, 253–258. [CrossRef] [PubMed]
    [Google Scholar]
  12. Lachance M.-A. , Bowles J. M. , Wiens F. , Dobson J. , Ewing C. P. . ( 2006; ). Metschnikowia orientalis sp. nov., an Australasian yeast from nitidulid beetles. . Int J Syst Evol Microbiol 56:, 2489–2493. [CrossRef] [PubMed]
    [Google Scholar]
  13. Mendonça-Hagler L. C. , Hagler A. N. , Kurtzman C. P. . ( 1993; ). Phylogeny of Metschnikowia species estimated from partial rRNA sequences. . Int J Syst Bacteriol 43:, 368–373. [CrossRef] [PubMed]
    [Google Scholar]
  14. Rambaut A. . ( 2002; ). se-al: sequence alignment editor, version 2.0a11. . University of Oxford;, Oxford, UK:.
  15. Robert V. , Bonjean B. , Untereiner W. . ( 1998; ). Problems and prospects linked to studies of yeast biodiversity. Proc . . of Asia-Pacific Myc. Conf. 56–67.
    [Google Scholar]
  16. Rosa C. A. , Lachance M.-A. , Starmer W. T. , Barker J. S. F. , Bowles J. M. , Schlag-Edler B. . ( 1999; ). Kodamaea nitidulidarum, Candida restingae and Kodamaea anthophila, three new related yeast species from ephemeral flowers. . Int J Syst Bacteriol 49:, 309–318. [CrossRef] [PubMed]
    [Google Scholar]
  17. Rosa C. A. , Pagnocca F. C. , Lachance M.-A. , Ruivo C. C. C. , Medeiros A. O. , Pimentel M. R. C. , Fontenelle J. C. R. , Martins R. P. . ( 2007; ). Candida flosculorum sp. nov. and Candida floris sp. nov., two yeast species associated with tropical flowers. . Int J Syst Evol Microbiol 57:, 2970–2974. [CrossRef] [PubMed]
    [Google Scholar]
  18. Swofford D. L. . ( 2003; ). paup*: phylogenetic analysis using parsimony (*and other methods). . Version 4. Sunderland, Massachusetts:: Sinauer Associates;.
  19. Vilgalys R. , Hester M. . ( 1990; ). Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. . J Bacteriol 172:, 4238–4246.[PubMed]
    [Google Scholar]
  20. White T. J. , Bruns T. , Lee S. , Taylor J. . ( 1990; ). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenics. . In PCR Protocols: a Guide to Methods and Applications, pp. 315–322. Edited by Innis N. , Gelfand D. , Sninsky J. , White T. . . USA:: Academic Press;.
    [Google Scholar]
  21. Yamada Y. , Suzuki T. , Matsuda M. , Mikata K. . ( 1995; ). The phylogeny of Yamadazyma ohmeri (Etchells et Bell) Billon-Grand based on the partial sequences of 18S and 26S ribosomal RNAs: the proposal of Kodamaea gen. nov. (Saccharomycetaceae). . Biosci Biotechnol Biochem 59:, 1172–1174. [CrossRef] [PubMed]
    [Google Scholar]
  22. Yarrow D. . ( 1998; ). Methods for the isolation, maintenance and identification of yeasts. . In The Yeasts: a Taxonomic Study, , 4th edn., pp. 77–100. Edited by Kurtzman C. P. , Fell J. W. . . Amsterdam:: Elsevier;. [CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.026062-0
Loading
/content/journal/ijsem/10.1099/ijs.0.026062-0
Loading

Data & Media loading...

Supplements

vol. , part 8, pp. 2015 - 2022

The first of 12 equally most parsimonious trees obtained from a heuristic search with 1000 random taxon additions of the ITS sequence alignment (TL=1802 steps; CI=0.444; RI=0.628; RC=0.279). [PDF](40KB)



PDF

Most cited articles

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error