Pseudonocardia chloroethenivorans sp. nov., a chloroethene-degrading actinomycete

References

1. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [CrossRef]
   [Google Scholar]
2. Ausubel F. M., Brent R., Kingston R. E., Moore D. D., Seidman J. G., Smith J. A. Struhl K. (editors) 1994 Current Protocols in Molecular Biology New York: Wiley;
   [Google Scholar]
3. Bielefeldt A. R., Stensel H. D., Strand S. E. 1995; Cometabolic degradation of TCE and DCE without intermediate toxicity. J Environ Eng ASCE 121:791–797 [CrossRef]
   [Google Scholar]
4. Bressler D. C., Leskiw B. K., Fedorak P. M. 1999; Biodegradation of benzothiophene sulfones by a filamentous bacterium. Can J Microbiol 45:360–368 [CrossRef]
   [Google Scholar]
5. Coutts R. T., Hargesheimer E. E., Pasutto F. M. 1979; Gas chromatographic analysis of trace phenols by direct acetylation in aqueous solution. J Chromatogr 12:291–299
   [Google Scholar]
6. Embley T. M., Smida J., Stackebrandt E. 1988; Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula , Pseudonocardia thermophila and Saccharopolyspora hirsuta , three wall type IV actinomycetes which lack mycolic acids. J Gen Microbiol 134:961–966
   [Google Scholar]
7. Ensley B. D. 1991; Biochemical diversity of trichloroethylene metabolism. Annu Rev Microbiol 45:283–299 [CrossRef]
   [Google Scholar]
8. Evtushenko L. I., Akimov V. N., Dobritsa S. V., Taptykova S. D. 1989; A new species of actinomycete, Amycolata alni . Int J Syst Bacteriol 39:72–77 [CrossRef]
   [Google Scholar]
9. Ewers J., Freier-Schröder D., Knackmuss H. J. 1990; Selection of trichloroethene (TCE) degrading bacteria that resist inactivation by TCE. Arch Microbiol 154:410–413
   [Google Scholar]
10. Felsenstein J. 1981; Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376 [CrossRef]
    [Google Scholar]
11. Felsenstein J. 1995 phylip (Phylogeny Inference Package) version 3.573 University of Washington; Seattle, USA:
    [Google Scholar]
12. Fetzner S. 1998; Bacterial dehalogenation. Appl Microbiol Biotechnol 50:633–657 [CrossRef]
    [Google Scholar]
13. Gerritse J., Renard V., Visser J., Gottschal J. C. 1995; Complete degradation of tetrachloroethene by combining anaerobic dechlorinating and aerobic methanotrophic enrichment cultures. Appl Microbiol Biotechnol 43:920–928 [CrossRef]
    [Google Scholar]
14. Gilbert D. G. 1999; SeqPup, a biological sequence editor and analysis program written in java. Available at http://iubio.bio.indiana.edu
15. Gordon R. E., Barnett D. A., Handerhan J. E., Pang C. H.-N. 1974; Nocardia coeliaca , Nocardia autotrophica , and the nocardin strain. Int J Syst Bacteriol 24:54–63 [CrossRef]
    [Google Scholar]
16. Gouy M. 2000; NJplot. Laboratoire de Biométrie et Biologie Evolutive. Université Lyon: http://pbil.univ-lyon1.fr/software/njplot.html
17. Gray J. P., Herwig R. P. 1996; Phylogenetic analysis of the bacterial communities in marine sediments. Appl Environ Microbiol 62:4049–4059
    [Google Scholar]
18. Hall T. 2001 BioEdit Department of Microbiology, North Carolina State University;
    [Google Scholar]
19. Huang Y., Wang L., Lu Z., Hong L., Liu Z., Tan G. Y. A., Goodfellow M. 2002; Proposal to combine the genera Actinobispora and Pseudonocardia in an emended genus Pseudonocardia , and description of Pseudonocardia zijingensis sp. nov. Int J Syst Evol Microbiol 52:977–982 [CrossRef]
    [Google Scholar]
20. Juteau P., Larocque R., Rho D., LeDuy A. 1999; Analysis of the relative abundance of different types of bacteria capable of toluene degradation in a compost biofilter. Appl Microbiol Biotechnol 52:863–868 [CrossRef]
    [Google Scholar]
21. Kesseler M., Dabbs E. R., Averhoff B., Gottschalk G. 1996; Studies on the isopropylbenzene 2,3-dioxygenase and the 3-isopropylcatechol 2,3-dioxygenase genes encoded by the linear plasmid of Rhodococcus erythropolis BD2. Microbiology 142:3241–3251 [CrossRef]
    [Google Scholar]
22. Kohlweyer U., Thiemer B., Schrader T., Andreesen J. R. 2000; Tetrahydrofuran degradation by a newly isolated culture of Pseudonocardia sp. strain K1. FEMS Microbiol Lett 186:301–306 [CrossRef]
    [Google Scholar]
23. Komagata K., Suzuki K.-I. 1987; Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–203
    [Google Scholar]
24. Lee S.-B., Strand S. E., Stensel H. D. 2000; Sustained degradation of trichloroethylene in a suspended growth gas treatment reactor by an actinomycetes enrichment. Environ Sci Technol 34:3261–3268 [CrossRef]
    [Google Scholar]
25. Lee S. D., Kim E. S., Min K.-L., Lee W. Y., Kang S.-O., Hah Y. C. 2001; Pseudonocardia kongjuensis sp. nov., isolated from a gold mine cave. Int J Syst Evol Microbiol 51:1505–1510
    [Google Scholar]
26. Lee S. D., Kim E. S., Kang S.-O., Hah Y. C. 2002; Pseudonocardia spinosispora sp. nov., isolated from Korean soil. Int J Syst Evol Microbiol 52:1603–1608 [CrossRef]
    [Google Scholar]
27. Maidak B. L., Cole J. R., Lilburn T. G. The RDP-II (Ribosomal Database Project) 7 other authors 2001 Nucleic Acids Res 29:173–174 [CrossRef]
    [Google Scholar]
28. MIDI 1993 Microbial Identification System Operational Manual Newark, NJ: MIDI;
    [Google Scholar]
29. Nelson M. J., Montgomery S. O., Mahaffey W. R., Pritchard P. H. 1987; Biodegradation of trichloroethylene and involvement of an aromatic biodegradative pathway. Appl Environ Microbiol 53:949–954
    [Google Scholar]
30. Nelson M. J., Montgomery S. O., Pritchard P. H. 1988; Trichloroethylene metabolism by microorganisms that degrade aromatic compounds. Appl Environ Microbiol 54:604–606
    [Google Scholar]
31. Olsen G. J., Matsuda H., Hagström R., Overbeek R. 1994; fastDNAmL: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci 10:41–48
    [Google Scholar]
32. Reichert K., Lipski A., Pradella S., Stackebrandt E., Altendorf K. 1998; Pseudonocardia asaccharolytica sp. nov. and Pseudonocardia sulfidoxydans sp. nov., two new dimethyl disulfide-degrading actinomycetes and emended description of the genus Pseudonocardia . Int J Syst Bacteriol 48:441–449 [CrossRef]
    [Google Scholar]
33. Saddler G. S., Tavecchia P., Lociuro S., Zanol M., Colombo L., Selva E. 1991; Analysis of madurose and other actinomycete whole cell sugars by gas chromatography. J Microbiol Methods 14:185–191 [CrossRef]
    [Google Scholar]
34. Saeki H., Akira M., Furuhashi K., Averhoff B., Gottschalk G. 1999; Degradation of trichloroethene by a linear-plasmid-encoded alkene monooxygenase in Rhodococcus corallinus ( Nocardia corallina ) B-276. Microbiology 145:1721–1730 [CrossRef]
    [Google Scholar]
35. Semprini L. 1995; In situ bioremediation of chlorinated solvents. Environ Health Perspect 103 (Suppl. 5):101–105 [CrossRef]
    [Google Scholar]
36. Sullivan J. P., Dickinson D., Chase H. A. 1998; Methanotrophs, Methylosinus trichosporium OB3b, sMMO, and their application to bioremediation. Crit Rev Microbiol 24:335–373 [CrossRef]
    [Google Scholar]
37. US Environmental Protection Agency 1991 Survey of Material-handling Technologies Used at Hazardous Waste Sites . National Technical Information Service order number PB91-921283, report number EPA/540/2-91/010 Washington, DC: US Government Printing Office;
    [Google Scholar]
38. Wackett L. P., Brusseau G. A., Householder S. R., Hanson R. S. 1989; Survey of microbial oxygenases: trichloroethylene degradation by propane-oxidizing bacteria. Appl Environ Microbiol 55:2960–2964
    [Google Scholar]
39. Warwick S., Bowen T., McVeigh H., Embley T. M. 1994; A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia . Int J Syst Bacteriol 44:293–299 [CrossRef]
    [Google Scholar]