1887

Abstract

A non-motile, red-pigmented bacterium, designated strain HMD1010, was isolated from an artificial lake located within the campus of Hankuk University of Foreign Studies, Yongin, Korea. A phylogenetic tree based on 16S rRNA gene sequences showed that strain HMD1010 formed a lineage within the genus and was closely related to the type strains of (96.7 % sequence similarity) and (95.6 %). The major fatty acids were Cω5 (21.9 %), summed feature 3 (iso-C 2-OH and/or Cω7; 17.2 %), iso-C (14.5 %) and summed feature 4 (anteiso-C B and/or iso-C I; 11.9 %). The DNA G+C content was 60.4 mol%. On the basis of the evidence presented in this study, strain HMD1010 represents a novel species of the genus , for which the name sp. nov. was proposed. The type strain is HMD1010 ( = KCTC 22745  = CECT 7546).

Funding
This study was supported by the:
  • National Institute of Biological Resources (NIBR)
  • Ministry of Environment, Korea
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2011-07-01
2021-07-24
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References

  1. Baik K. S., Seong C. N., Moon E. Y., Park Y. D., Yi H., Chun J. 2006; Hymenobacter rigui sp. nov., isolated from wetland freshwater. Int J Syst Evol Microbiol 56:2189–2192 [View Article][PubMed]
    [Google Scholar]
  2. Bernardet J. F., Vancanneyt M., Matte-Tailliez O., Grisez L., Tailliez P., Bizet C., Nowakowski M., Kerouault B., Swings J. 2005; Polyphasic study of Chryseobacterium strains isolated from diseased aquatic animals. Syst Appl Microbiol 28:640–660 [View Article][PubMed]
    [Google Scholar]
  3. Buczolits S., Denner E. B., Vybiral D., Wieser M., Kämpfer P., Busse H.-J. 2002; Classification of three airborne bacteria and proposal of Hymenobacter aerophilus sp. nov.. Int J Syst Evol Microbiol 52:445–456[PubMed]
    [Google Scholar]
  4. Buczolits S., Denner E. B., Kämpfer P., Busse H.-J. 2006; Proposal of Hymenobacter norwichensis sp. nov., classification of ‘Taxeobacter ocellatus’, ‘Taxeobacter gelupurpurascens’ and ‘Taxeobacter chitinovorans’ as Hymenobacter ocellatus sp. nov., Hymenobacter gelipurpurascens sp. nov. and Hymenobacter chitinivorans sp. nov., respectively, and emended description of the genus Hymenobacter Hirsch et al. 1999. Int J Syst Evol Microbiol 56:2071–2078 [View Article][PubMed]
    [Google Scholar]
  5. Cho J. C., Giovannoni S. J. 2003; Parvularcula bermudensis gen. nov., sp. nov., a marine bacterium that forms a deep branch in the α-Proteobacteria . Int J Syst Evol Microbiol 53:1031–1036 [View Article][PubMed]
    [Google Scholar]
  6. Chun J., Lee J. H., Jung Y., Kim M., Kim S., Kim B. K., Lim Y. W. 2007; EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259–2261 [View Article][PubMed]
    [Google Scholar]
  7. Collins M. D., Hutson R. A., Grant I. R., Patterson M. F. 2000; Phylogenetic characterization of a novel radiation-resistant bacterium from irradiated pork: description of Hymenobacter actinosclerus sp. nov.. Int J Syst Evol Microbiol 50:731–734[PubMed] [CrossRef]
    [Google Scholar]
  8. Felsenstein J. 1981; Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376 [View Article][PubMed]
    [Google Scholar]
  9. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [View Article]
    [Google Scholar]
  10. Fitch W. M. 1971; Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416 [View Article]
    [Google Scholar]
  11. Hirsch P., Ludwig W., Hethke C., Sittig M., Hoffmann B., Gallikowski C. A. 1998; Hymenobacter roseosalivarius gen. nov., sp. nov. from continental Antarctic soils and sandstone: bacteria of the Cytophaga/Flavobacterium/Bacteroides line of phylogenetic descent. Syst Appl Microbiol 21:374–383[PubMed] [CrossRef]
    [Google Scholar]
  12. Kim K. H., Im W. T., Lee S. T. 2008; Hymenobacter soli sp. nov., isolated from grass soil. Int J Syst Evol Microbiol 58:941–945 [View Article][PubMed]
    [Google Scholar]
  13. MacFaddin J. F. 1980 Biochemical Tests for Identification of Medical Bacteria, 2nd edn. Baltimore: Williams & Wilkins;
    [Google Scholar]
  14. Mesbah M., Whitman W. B. 1989; Measurement of deoxyguanosine/thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr A 479:297–306 [View Article][PubMed]
    [Google Scholar]
  15. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425[PubMed]
    [Google Scholar]
  16. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [View Article][PubMed]
    [Google Scholar]
  17. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. et al. 1987; International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [View Article]
    [Google Scholar]
  18. Xu J. L., Liu Q. M., Yu H. S., Jin F. X., Lee S. T., Im W. T. 2009; Hymenobacter daecheongensis sp. nov., isolated from stream sediment. Int J Syst Evol Microbiol 59:1183–1187 [View Article][PubMed]
    [Google Scholar]
  19. Zhang Q., Liu C., Tang Y., Zhou G., Shen P., Fang C., Yokota A. 2007; Hymenobacter xinjiangensis sp. nov., a radiation-resistant bacterium isolated from the desert of Xinjiang, China. Int J Syst Evol Microbiol 57:1752–1756 [View Article][PubMed]
    [Google Scholar]
  20. Zhang G., Niu F., Busse H.-J., Ma X., Liu W., Dong M., Feng H., An L., Cheng G. 2008; Hymenobacter psychrotolerans sp. nov., isolated from the Qinghai–Tibet Plateau permafrost region. Int J Syst Evol Microbiol 58:1215–1220 [View Article][PubMed]
    [Google Scholar]
  21. Zhang L., Dai J., Tang Y., Luo X., Wang Y., An H., Fang C., Zhang C. 2009; Hymenobacter deserti sp. nov., isolated from the desert of Xinjiang, China. Int J Syst Evol Microbiol 59:77–82 [View Article][PubMed]
    [Google Scholar]
  22. Zhang D. C., Busse H.-J., Liu H. C., Zhou Y. G., Schinner F., Margesin R. 2011; Hymenobacter psychrophilus sp. nov., a psychrophilic bacterium isolated from soil. Int J Syst Evol Microbiol 61:859–863 [CrossRef]
    [Google Scholar]
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