1887

Abstract

A rod-shaped, endospore-forming, Gram-reaction-variable bacterial strain, designated WPCB173, was isolated from freshwater collected from the Woopo wetland, Republic of Korea. Based on its phenotypic characteristics and phylogenetic position inferred from 16S rRNA gene sequence analysis, the isolate was identified as being a member of the genus . Major polar lipids present in strain WPCB173 included phosphatidylethanolamine and several unidentified phospholipids. The diamino acid found in the cell-wall peptidoglycan was diaminopimelic acid. The predominant menaquinone was MK-7. The major cellular fatty acid was anteiso-C (65.2 %). The DNA G+C content was 48.3 mol%. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain WPCB173 clustered with species of the genus , its closest neighbours being WN9 (96.7 %) and DCY03 (96.4 %). DNA–DNA hybridization of strain WPCB173 with DCY03 and WN9 showed relatedness values of only 10 and 19 %, respectively. On the basis of the phenotypic and phylogenetic evidence, strain WPCB173 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain of the novel species is WPCB173 (=KCTC 13282 =JCM 16352).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.021485-0
2011-03-01
2024-04-23
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/61/3/529.html?itemId=/content/journal/ijsem/10.1099/ijs.0.021485-0&mimeType=html&fmt=ahah

References

  1. Alexander B., Priest F. G. 1989; Bacillus glucanolyticus , a new species that degrades a variety of β -glucans. Int J Syst Bacteriol 39:112–115 [CrossRef]
    [Google Scholar]
  2. Ash C., Priest F. G., Collins M. D. 1993; Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus . Antonie van Leeuwenhoek 64:253–260
    [Google Scholar]
  3. Baik K. S., Park S. C., Kim E. M., Bae K. S., Ahn J. H., Ka J. O., Chun J., Seong C. N. 2008; Diversity of bacterial community in freshwater of Woopo wetland. J Microbiol 46:647–655 [CrossRef]
    [Google Scholar]
  4. Chun J. 1995; Computer - assisted classification and identification of actinomycetes . PhD thesis University of Newcastle;
  5. Chun J., Goodfellow M. 1995; A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45:240–245 [CrossRef]
    [Google Scholar]
  6. Chun J., Lee J.-H., Jung Y., Kim M., Kim S., Kim B. K., Lim Y. W. 2007; EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259–2261 [CrossRef]
    [Google Scholar]
  7. Chung Y. R., Kim C. H., Hwang I., Chun J. 2000; Paenibacillus koreensis sp. nov., a new species that produces an iturin-like antifungal compound. Int J Syst Evol Microbiol 50:1495–1500 [CrossRef]
    [Google Scholar]
  8. Claus D., Berkeley R. C. W. 1986; Genus Bacillus Cohn 1872. In Bergey’s Manual of Systematic Bacteriology vol 2 pp 1105–1139 Edited by Sneath P. H. A., Mair S., Sharpe M. E., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
  9. CLSI 2003 Performance standards for antimicrobial disk susceptibility tests, 8th edn. Approved Standard M2–A8. Wayne, PA: Clinical Laboratory Standards Institute;
    [Google Scholar]
  10. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [CrossRef]
    [Google Scholar]
  11. Felsenstein J. 1993 phylip (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences University of Washington; Seattle, USA:
    [Google Scholar]
  12. Fitch W. M. 1971; Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406–416 [CrossRef]
    [Google Scholar]
  13. Fitch W. M., Margoliash E. 1967; Construction of phylogenetic trees. Science 155:279–284 [CrossRef]
    [Google Scholar]
  14. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules. In Mammalian Protein Metabolism pp 21–132 Edited by Munro H. N. New York: Academic Press;
    [Google Scholar]
  15. Kanzawa Y., Harada A., Takeuchi M., Yokota A., Harada T. 1995; Bacillus curdlanolyticus sp. nov. and Bacillus kobensis sp. nov., which hydrolyze resistant curdlan. Int J Syst Bacteriol 45:515–521 [CrossRef]
    [Google Scholar]
  16. Komagata K., Suzuki K. 1987; Lipids and cell-wall analysis in bacterial systematics. Methods Microbiol 19:161–207
    [Google Scholar]
  17. Kroppenstedt R. M. 1985; Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics pp 173–199 Edited by Goodfellow M., Minnikin D. E. London: Academic Press;
    [Google Scholar]
  18. Lee J.-S., Lee K. C., Pyun Y.-R., Bae K. S. 2003; Arthrobacter koreensis sp. nov., a novel alkalitolerant bacterium from soil. Int J Syst Evol Microbiol 53:
    [Google Scholar]
  19. Mandel M., Igambi L., Bergendahl J., Dodson M. L. Jr, Scheltgen E. 1970; Correlation of melting temperature and cesium chloride buoyant density of bacterial deoxyribonucleic acid. J Bacteriol 101:333–338
    [Google Scholar]
  20. Marmur J., Doty P. 1962; Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109–118 [CrossRef]
    [Google Scholar]
  21. MIDI 1999 Sherlock Microbial Identification System Operating Manual, version 3.0 Newark, DE: MIDI Inc;
    [Google Scholar]
  22. Minnikin D. E., O'Donnell A. G., Goodfellow M., Alderson G., Athayle M., Schaal A., Parlett J. H. 1984; An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241 [CrossRef]
    [Google Scholar]
  23. Montefusco A., Nakamura L. K., Labeda D. P. 1993; Bacillus peoriae sp. nov. Int J Syst Bacteriol 43:388–390 [CrossRef]
    [Google Scholar]
  24. Nakamura L. K. 1984; Bacillus amylolyticus sp. , nov., nom. rev., Bacillus lautus sp. nov., nom. rev., Bacillus pabuli sp. nov., nom. rev., and Bacillus validus sp. nov., nom. rev. Int J Syst Bacteriol 34224–226 [CrossRef]
    [Google Scholar]
  25. Nakamura L. K. 1987; Bacillus alginolyticus sp. nov. and Bacillus chondroitinus sp. nov., two alginate-degrading species. Int J Syst Bacteriol 37:284–286 [CrossRef]
    [Google Scholar]
  26. Park M.-J., Kim H.-B., An D.-S., Yang H.-C., Oh S.-T., Chung H.-J., Yang D.-C. 2007; Paenibacillus soli sp. nov., a xylanolytic bacterium isolated from soil. Int J Syst Evol Microbiol 57:146–150 [CrossRef]
    [Google Scholar]
  27. Powers E. M. 1995; Efficacy of the Ryu nonstaining KOH technique for rapidly determining Gram reactions of food-borne and waterborne bacteria and yeasts. Appl Environ Microbiol 61:3756–3758
    [Google Scholar]
  28. Priest F. G. 1977; Extracellular enzyme synthesis in the genus Bacillus . Bacteriol Rev 41:711–753
    [Google Scholar]
  29. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
  30. Seldin L., van Elsas J. D., Penido E. G. C. 1984; Bacillus azotofixans sp. nov., a nitrogen-fixing species from Brazilian soils and grass roots. Int J Syst Bacteriol 34:451–456 [CrossRef]
    [Google Scholar]
  31. Seo W.-T., Kahng G.-G., Nam S.-H., Choi S.-D., Suh H.-H., Kim S.-W., Park Y.-H. 1999; Isolation and characterization of a novel exopolysaccharide-producing Paenibacillus sp. WN9 KCTC 8951P. J Microbiol Biotechnol 9:820–825
    [Google Scholar]
  32. Shida O., Takagi H., Kadowaki K., Nakamura L. K., Komagata K. 1997; Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov. Int J Syst Bacteriol 47:299–306 [CrossRef]
    [Google Scholar]
  33. Skerman V. B. D. 1967 A Guide to the Identification of the Genera of Bacteria, 2nd edn. Baltimore: Williams & Wilkins;
    [Google Scholar]
  34. Smibert R. M., Krieg N. R. 1994; General characterization. In Methods for General and Molecular Bacteriology. pp 607–654 Edited by Gebhardt P., Murray R. G. E., Wood W. A., Krieg N. R. Washington, DC: American Society for Microbiology;
  35. Stackebrandt E., Goebel B. M. 1994; Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849 [CrossRef]
    [Google Scholar]
  36. Staley J. T. 1968; Prosthecomicrobium and Ancalomicrobium : new prosthecate freshwater bacteria. J Bacteriol 95:1921–1942
    [Google Scholar]
  37. Swofford D. L. 1998 paup*: Phylogenetic analysis using parsimony (and other methods), version 4 Sunderland, MA: Sinauer Associates;
    [Google Scholar]
  38. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]
  39. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E., other authors N. 1987; International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [CrossRef]
    [Google Scholar]
  40. Yoon J.-H., Yim D. K., Lee J.-S., Shin K.-S., Sato H. H., Lee S. T., Park Y. K., Park Y.-H. 1998; Paenibacillus campinasensis sp. nov., a cyclodextrin-producing bacterium isolated in Brazil. Int J Syst Bacteriol 48:833–837 [CrossRef]
    [Google Scholar]
  41. Yoon J.-H., Seo W.-T., Shin Y. K., Kho Y. H., Kang K. H., Park Y.-H. 2002; Paenibacillus chinjuensis sp. nov., a novel exopolysaccharide-producing bacterium. Int J Syst Evol Microbiol 52:415–421
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.021485-0
Loading
/content/journal/ijsem/10.1099/ijs.0.021485-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error