Flavobacterium haoranii sp. nov., a cypermethrin-degrading bacterium isolated from a wastewater treatment system

References

1. Bergey D. H., Harrison F. C., Breed R. S., Hammer B. W., Huntoon F. M. (editors) 1923; Genus II. Flavobacterium gen. nov. In Bergey's Manual of Determinative Bacteriology, 1st edn. pp 97–117 Baltimore: Williams & Wilkins;
   [Google Scholar]
2. Bernardet J.-F., Bowman J. P. 2006; The genus Flavobacterium . In The Prokaryotes: a Handbook on the biology of bacteria. , 3rd edn. vol 7 pp 481–531 Edited by Dworkin M., Falkow S., Rosenberg E., Schleifer K. H., Stackebrandt E. New York: Springer;
3. Bernardet J.-F., Grimont P. A. D. 1989; Deoxyribonucleic acid relatedness and phenotypic characterization of Flexibacter columnaris sp. , nov., nom. rev., Flexibacter psychrophilus sp. nov., nom. rev. and Flexibacter maritimus Wakabayashi, Hikida, and Masumura 1986. Int J Syst Bacteriol 39346–354 [CrossRef]
   [Google Scholar]
4. Bernardet J.-F., Segers P., Vancanneyt M., Berthe F., Kersters K., Vandamme P. 1996; Cutting a Gordian knot: emended classification and description of the genus Flavobacterium , emended description of the family Flavobacteriaceae , and proposal of Flavobacterium hydatis nom. nov. (basonym Cytophaga aquatilis Strohl and Tait 1978). Int J Syst Bacteriol 46:128–148 [CrossRef]
   [Google Scholar]
5. Bernardet J.-F., Nakagawa Y., Holmes B. 2002; Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52:1049–1070 [CrossRef]
   [Google Scholar]
6. Buck J. D. 1982; Nonstaining (KOH) method for determination of gram reactions of marine bacteria. Appl Environ Microbiol 44:992–993
   [Google Scholar]
7. Felsenstein J. 1993 phylip (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences University of Washington; Seattle, USA:
   [Google Scholar]
8. Kämpfer P., Kroppenstedt R. M. 1996; Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42:989–1005 [CrossRef]
   [Google Scholar]
9. Kaufman D. D., Russell B. A., Helling C. S., Kayser A. J. 1981; Movement of cypermethrin, decamethrin, permethrin and their degradation products in soil. J Agric Food Chem 29:239–245 [CrossRef]
   [Google Scholar]
10. Kim B.-Y., Weon H.-Y., Cousin S., Yoo S.-H., Kwon S.-W., Go S.-J., Stackebrandt E. 2006; Flavobacterium daejeonense sp. nov. and Flavobacterium suncheonense sp. nov., isolated from greenhouse soils in Korea. Int J Syst Evol Microbiol 561645–1649 [CrossRef]
    [Google Scholar]
11. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [CrossRef]
    [Google Scholar]
12. Kimura M. 1983 The Neutral Theory of Molecular Evolution Cambridge: Cambridge University Press;
    [Google Scholar]
13. Kumar S., Tamura K., Nei M. 2004; mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5:150–163 [CrossRef]
    [Google Scholar]
14. Kuykendall L. D., Roy M. A., O'Neill J. J., Devine T. E. 1988; Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum . Int J Syst Bacteriol 38:358–361 [CrossRef]
    [Google Scholar]
15. Lane D. J. 1991; 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics pp 115–175 Edited by Stackebrandt E., Goodfellow M. Chichester: Wiley;
    [Google Scholar]
16. Lányí B. 1987; Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19:1–67
    [Google Scholar]
17. Marmur J., Doty P. 1962; Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5:109–118 [CrossRef]
    [Google Scholar]
18. Miller L. T. 1982; Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 16:584–586
    [Google Scholar]
19. Park M., Lu S., Ryu S. H., Chung B. S., Park W., Kim C. J., Jeon C. O. 2006; Flavobacterium croceum sp. nov., isolated from activated sludge. Int J Syst Evol Microbiol 56:2443–2447 [CrossRef]
    [Google Scholar]
20. Qu J.-H., Li H.-F., Yang J.-S., Yuan H.-L. 2008; Flavobacterium cheniae sp. nov., isolated from sediment of a eutrophic reservoir. Int J Syst Evol Microbiol 58:2186–2190 [CrossRef]
    [Google Scholar]
21. Roberts T. R., Standen M. E. 1981; Further studies of the degradation of the pyrethroid insecticide cypermethrin in soils. Pestic Sci 12:285–296 [CrossRef]
    [Google Scholar]
22. Saha P., Chakrabarti T. 2006; Flavobacterium indicum sp. nov., isolated from warm spring water in Assam, India. Int J Syst Evol Microbiol 56:2617–2621 [CrossRef]
    [Google Scholar]
23. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
24. Sambrook J., Russell D. W. 2001 Molecular Cloning: a Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press;
    [Google Scholar]
25. Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F., Higgins D. G. 1997; The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 [CrossRef]
    [Google Scholar]
26. Wang Z.-W., Liu Y.-H., Dai X., Wang B.-J., Jiang C.-Y., Liu S.-J. 2006; Flavobacterium saliperosum sp. nov., isolated from freshwater lake sediment. Int J Syst Evol Microbiol 56:439–442 [CrossRef]
    [Google Scholar]
27. Weon H. Y., Song M. H., Son J.-A., Kim B.-Y., Kwon S.-W., Go S.-J., Stackebrandt E. 2007; Flavobacterium terrae sp. nov. and Flavobacterium cucumis sp. nov., isolated from greenhouse soil. Int J Syst Evol Microbiol 57:1594–1598 [CrossRef]
    [Google Scholar]