Photobacterium jeanii sp. nov., isolated from corals and zoanthids

References

1. Alves N. Jr, Maia Neto O. S., Silva B. S. O., De Moura R. L., Francini-Filho R. B., Barreira e Castro C, Paranhos R., Bitner-Mathé B. C., Kruger R. H. other authors 2010; Diversity and pathogenic potential of vibrios isolated from Abrolhos Bank corals. Environ Microbiol Rep 2:90–95
   [Google Scholar]
2. Ast J. C., Cleenwerck I., Engelbeen K., Urbanczyk H., Thompson F. L., De Vos P., Dunlap P. V. 2007; Photobacterium kishitanii sp. nov., a luminous marine bacterium symbiotic with deep-sea fishes. Int J Syst Evol Microbiol 57:2073–2078 [CrossRef]
   [Google Scholar]
3. Baumann P., Baumann L. 1984; Genus Photobacterium Beijerinck 1889, 401^AL . In Bergey's Manual of Systematic Bacteriology vol 1 pp 539–545 Edited by Krieg N. R., Holt J. G. Baltimore: Williams & Wilkins;
   [Google Scholar]
4. Chimetto L. A., Brocchi M., Thompson C. C., Martins R. C. R., Ramos H. B., Thompson F. L. 2008; Vibrios dominate as culturable nitrogen-fixing bacteria of Brazilian coral Mussismulia hispida . Syst Appl Microbiol 31:312–319 [CrossRef]
   [Google Scholar]
5. Chimetto L. A., Brocchi M., Gondo M., Thompson C. C., Gomez-Gil B., Thompson F. L. 2009; Genomic diversity of vibrios associated with the Brazilian coral Mussismilia hispida and its sympatric zoanthids ( Palythoa caribaeorum , Palythoa variabilis and Zoanthus solanderi ). J Appl Microbiol 106:1818–1826 [CrossRef]
   [Google Scholar]
6. Dinsdale E. A., Pantos O., Smriga S., Edwards R. A., Angly F., Wegley L., Hatay M., Hall D., Brown E. other authors 2008; Microbial ecology of four coral atolls in the Northern Line Islands. PLoS One 3:e1584 [CrossRef]
   [Google Scholar]
7. Ducklow H. W., Mitchell R. 1979; Composition of mucus released by coral reef coelenterates. Limnol Oceanogr 24:706–714 [CrossRef]
   [Google Scholar]
8. Eck R. V., Dayhoff M. O. 1966 Atlas of Protein Sequence and Structure Silver Springs, MD: National Biomedical Research Foundation;
   [Google Scholar]
9. Ezaki T., Hashimoto Y., Yabuuchi E. 1989; Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229 [CrossRef]
   [Google Scholar]
10. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [CrossRef]
    [Google Scholar]
11. Gomez-Gil B., Roque A., Rotllant G., Peinado L., Romalde J. L., Doce A., Cabanillas-Beltrán H., Chimetto L., Thompson F. L. 2011; Photobacterium swingsii sp. nov., isolated from marine organisms. Int J Syst Evol Microbiol 61: (in press) [View Article]
    [Google Scholar]
12. Goris J., Suzuki K., De Vos P., Nakase T., Kersters K. 1998; Evaluation of a microplate DNA-DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44:1148–1153 [CrossRef]
    [Google Scholar]
13. Huys G., Vancanneyt M., Coopman R., Janssen P., Falsen E., Altwegg M., Kersters K. 1994; Cellular fatty-acid composition as a chemotaxonomic marker for the differentiation of phenospecies and hybridization groups in the genus Aeromonas . Int J Syst Bacteriol 44:651–658 [CrossRef]
    [Google Scholar]
14. Jung S. Y., Jung Y. T., Oh T. K., Yoon J. H. 2007; Photobacterium lutimaris sp. nov., isolated from a tidal flat sediment in Korea. Int J Syst Evol Microbiol 57:332–336 [CrossRef]
    [Google Scholar]
15. Kooperman N., Ben-Dov E., Kramarsky-Winter E., Barak Z., Kushmaro A. 2007; Coral mucus-associated bacterial communities from natural and aquarium environments. FEMS Microbiol Lett 276:106–113 [CrossRef]
    [Google Scholar]
16. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [CrossRef]
    [Google Scholar]
17. Nogi Y., Masui N., Kato C. 1998; Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment. Extremophiles 2:1–7 [CrossRef]
    [Google Scholar]
18. Park Y. D., Baik K. S., Seong C. N., Bae K. S., Kim S., Chun J. 2006; Photobacterium ganghwense sp. nov., a halophilic bacterium isolated from sea water. Int J Syst Evol Microbiol 56:745–749 [CrossRef]
    [Google Scholar]
19. Ritchie K. B. 2006; Regulation of microbial populations by coral surface mucus and mucus-associated bacteria. Mar Ecol Prog Ser 322:1–14 [CrossRef]
    [Google Scholar]
20. Rivas R., Garcia-Fraile P., Mateos P. F., Martinez-Molina E., Velázquez E. 2006; Photobacterium halotolerans sp. nov., isolated from Lake Martel in Spain. Int J Syst Evol Microbiol 56:1067–1071 [CrossRef]
    [Google Scholar]
21. Rohwer F., Breitbart M., Jara J., Azam F., Knowlton N. 2001; Diversity of bacteria associated with the Caribbean coral Montastraea franksi . Coral Reefs 20:85–91 [CrossRef]
    [Google Scholar]
22. Rosenberg E., Koren O., Reshef L., Efrony R., Zilber-Rosenberg I. 2007; The role of microorganisms in coral health, disease and evolution. Nat Rev Microbiol 5:355–362 [CrossRef]
    [Google Scholar]
23. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
24. Sawabe T., Kita-Tsukamoto K., Thompson F. L. 2007; Inferring the evolutionary history of vibrios by means of multilocus sequence analysis. J Bacteriol 189:7932–7936 [CrossRef]
    [Google Scholar]
25. Seo H. J., Bae S. S., Lee J. H., Kim S. J. 2005; Photobacterium frigidiphilum sp. nov., a psychrophilic, lipolytic bacterium isolated from deep-sea sediments of Edison Seamount. Int J Syst Evol Microbiol 55:1661–1666 [CrossRef]
    [Google Scholar]
26. Shnit-Orland M., Kushmaro A. 2009; Coral mucus-associated bacteria: a possible first line of defense. FEMS Microbiol Ecol 67:371–380 [CrossRef]
    [Google Scholar]
27. Sussman M., Mieog J. C., Doyle J., Victor S., Willis B. L., Bourne D. G. 2009; Vibrio zinc-metalloprotease causes photoinactivation of coral endosymbionts and coral tissue lesions. PLoS One 4:e4511 [CrossRef]
    [Google Scholar]
28. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [CrossRef]
    [Google Scholar]
29. Thompson F. L., Hoste B., Thompson C. C., Huys G., Swings J. 2001a; The coral bleaching Vibrio shiloi Kushmaro et al. 2001 is a later synonym of Vibrio mediterranei Pujalte and Garay 1986. Syst Appl Microbiol 24:516–519 [CrossRef]
    [Google Scholar]
30. Thompson F. L., Hoste B., Vandemeulebroecke K., Swings J. 2001b; Genomic diversity amongst Vibrio isolates from different sources determined by fluorescent amplified fragment length polymorphism. Syst Appl Microbiol 24:520–538 [CrossRef]
    [Google Scholar]
31. Thompson F. L., Thompson C. C., Naser S., Vandemeulebroucke K., Hoste B., Munn C. B., Bourne D., Swings J. 2005a; Photobacterium rosenbergii sp. nov. and Enterovibrio coralii sp. nov., vibrios associated with coral bleaching. Int J Syst Evol Microbiol 55:913–917 [CrossRef]
    [Google Scholar]
32. Thompson F. L., Gevers D., Thompson C. C., Dawyndt P., Naser S., Hoste B., Munn C. B., Swings J. 2005b; Phylogeny and molecular identification of vibrios based on multilocus sequence analysis. Appl Environ Microbiol 71:5107–5115 [CrossRef]
    [Google Scholar]
33. Thompson F. L., Barash Y., Sawabe T., Sharon G., Swings J., Rosenberg E. 2006; Thalassomonas loyana sp. nov., a causative agent of the white plague-like disease of corals on the Eilat coral reef. Int J Syst Evol Microbiol 56:365–368 [CrossRef]
    [Google Scholar]
34. Willems A., Doignon-Bourcier F., Goris J., Coopman R., de Lajudie P., De Vos P., Gillis M. 2001; DNA–DNA hybridization study of Bradyrhizobium strains. Int J Syst Evol Microbiol 51:1315–1322
    [Google Scholar]
35. Xie C.-H., Yokota A. 2004; Transfer of Hyphomicrobium indicum to the genus Photobacterium as Photobacterium indicum comb. nov. Int J Syst Evol Microbiol 54:2113–2116 [CrossRef]
    [Google Scholar]
36. Yoon J. H., Lee J. K., Kim Y. O., Oh T. K. 2005; Photobacterium lipolyticum sp. nov., a bacterium with lipolytic activity isolated from the Yellow Sea in Korea. Int J Syst Evol Microbiol 55:335–339 [CrossRef]
    [Google Scholar]
37. Yoshizawa S., Wada M., Kita-Tsukamoto K., Yokota A., Kogure K. 2009; Photobacterium aquimaris sp. nov., a luminous marine bacterium isolated from seawater. Int J Syst Evol Microbiol 59:1438–1442 [CrossRef]
    [Google Scholar]