Oceanotoga teriensis gen. nov., sp. nov., a thermophilic bacterium isolated from offshore oil-producing wells

References

1. Alain K., Marteinsson V. T., Miroshnichenko M. L., Bonch Osmolovskaya E. A., Prieur D., Birrien J. L. 2002; Marinitoga piezophila sp. nov., a rod-shaped, thermo-piezophilic bacterium isolated under high hydrostatic pressure from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 52:1331–1339 [CrossRef]
   [Google Scholar]
2. Altschul S. F., Madden T. L., Schäffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [CrossRef]
   [Google Scholar]
3. Balch W. E., Fox G. E., Magrum L. J., Woese C. R., Wolfe R. S. 1979; Methanogens: reevaluation of a unique biological group. Microbiol Rev 43:260–296
   [Google Scholar]
4. Bhupathiraju V. K., McInerney M. L., Knapp R. 1993; Pretest studies for a microbially enhanced oil recovery field pilot in a hypersaline oil reservoir. Geomicrobiol J 11:19–34 [CrossRef]
   [Google Scholar]
5. Davey M. E., Wood W. A., Key R., Nakamura K., Stahi D. 1993; Isolation three species of Geotoga and Petrotoga : Two new genera representing a new lineage in the bacterial line of descent distantly related to the “ Thermotogales ”. Syst Appl Microbiol 16:191–200 [CrossRef]
   [Google Scholar]
6. DiPippo J. L., Nesbø C. L., Dahle H., Doolittle W. F., Birkland N.-K., Noll K. M. 2009; Kosmotoga olearia gen. nov., sp. nov. a thermophilic, anaerobic heterotroph isolated from an oil production fluid. Int J Syst Evol Microbiol 59:2991–3000 [CrossRef]
   [Google Scholar]
7. Fardeau M.-L., Ollivier B., Patel B. K. C., Magot M., Thomas P., Rimbault A., Rocchiccioli F., Garcia J.-L. 1997; Thermotoga hypogea sp. nov., a xylanolytic, thermophilic bacterium from an oil-producing well. Int J Syst Bacteriol 47:1013–1019 [CrossRef]
   [Google Scholar]
8. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [CrossRef]
   [Google Scholar]
9. Felsenstein J. 2007 phylip (Phylogeny Inference Package) version 3.67. Department of Genome Sciences University of Washington; Seattle:
   [Google Scholar]
10. Feng Y., Cheng L., Zhang X., Li X., Deng Y., Zhang H. 2010 Thermococcoides shengliensis gen. nov., sp. nov., a new member of the order Thermotogales isolated from oil-production fluid. . Int J Syst Evol Microbiol 60, 932–937 [CrossRef]
11. Huber R., Stetter K. O. 1992; The Thermotogales : hyperthermophilic and extremely thermophilic bacteria. In Thermophilic bacteria pp 186–194 Edited by Kristjansson J. K. Boca Raton, FL: CRC Press;
    [Google Scholar]
12. Huber R., Langworthy T. A., Konig H., Thomn M., Woese C. R., Steytr U. B., Stetter K. O. 1986; Thermotoga maritima sp. nov. represents a new genus of uniquely extremely thermophilic eubacteria growing up to 90 °C. Arch Microbiol 144:324–333 [CrossRef]
    [Google Scholar]
13. Huber R., Woese C. R., Langworthy T. A., Fricke H., Stetter K. O. 1989; Thermosipho africanus gen. nov., represents a new genus of thermophilic eubacteria within the “ Thermotogales ”. Syst J Appl Microbiol 12:32–57 [CrossRef]
    [Google Scholar]
14. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules. In Mammalian Protein Metabolism pp 211–232 Edited by Munro H. N. New York: Academic Press;
    [Google Scholar]
15. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Evol Microbiol 39:159–167
    [Google Scholar]
16. Nunoura T., Oida H., Miyazaki M., Suzuki Y., Takai K., Horikoshi K. 2007; Marinitoga okinawensis sp. nov., a novel thermophilic and anaerobic heterotroph isolated from a deep-sea hydrothermal field, Southern Okinawa Trough. Int J Syst Evol Microbiol 57:467–471 [CrossRef]
    [Google Scholar]
17. Patel B. K. C., Morgan H. W., Daniel R. M. 1985; Fervidobacterium nodosum gen. nov. and spec. nov., a new chemoorganotrophic, caldoactive, anaerobic bacterium. Arch Microbiol 141:63–69 [CrossRef]
    [Google Scholar]
18. Ravot G., Ollivier B., Magot M., Patel B. K. C., Crolet J.-L., Fardeau M.-L., Garcia J.-L. 1995; Thiosulfate reduction, an important physiological feature shared by members of the order Thermotogales . Appl Environ Microbiol 61:2053–2055
    [Google Scholar]
19. Saitou N., Nei M. 1987; The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
20. Sambrook J., Fritsch E. F., Maniatis T. 1989 Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory;
    [Google Scholar]
21. Thompson J. D., Higgins D. G., Gibson T. J. 1994; clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680 [CrossRef]
    [Google Scholar]
22. Wery N., Lesongeur F., Pignet P., Derennes V., Cambon-Bonavita M. A., Godfroy A., Barbier G. 2001; Marinitoga camini gen. nov., sp. nov. a rod-shaped bacterium belonging to the order Thermotogales , isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 51:495–504
    [Google Scholar]
23. Zillig W., Holz I., Janekovic D., Klenk H. P., Imsel E., Trent J., Wunderl S., Forjaz V. H., Coutinho R., Ferreira T. 1990; Hyperthermus butylicus , a hyperthermophilic sulfur-reducing archaebacterium that ferments peptides. J Bacteriol 172:3959–3965
    [Google Scholar]