1887

Abstract

An actinomycete strain, K07-0523, was isolated from the roots of an orchid collected in Okinawa prefecture, Japan. 16S rRNA gene sequence analysis indicated that the new strain belonged to the family and the similarity values between strain K07-0523 and the type species of 24 genera in the family were 93.3–97.7 %. Strain K07-0523 contained -glutamic acid, glycine, -alanine, -diaminopimelic acid, hydroxydiaminopimelic acid and -lysine in the cell wall. The major menaquinones were MK-9(H), MK-10(H) and MK-10(H). Galactose, glucose, mannose, ribose and xylose were present in the whole-cell sugars. The acyl type of the peptidoglycan was glycolyl. Major fatty acids were anteiso-C, iso-C, iso-C and iso-C. Phosphatidylethanolamine was detected as the major phospholipid and corresponded to phospholipid type II. The G+C content of the genomic DNA was 73 mol%. On the basis of phylogenetic and chemotaxonomic data, the new strain represents a member of a new genus and novel species, namely gen. nov., sp. nov., in the family . The type strain of the type species is K07-0523 (=DSM 45306=NBRC 105367).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.016477-0
2010-11-01
2019-12-05
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/60/11/2652.html?itemId=/content/journal/ijsem/10.1099/ijs.0.016477-0&mimeType=html&fmt=ahah

References

  1. Ara, I. & Kudo, T. ( 2006; ). Three novel species of the genus Catellatospora, Catellatospora chokoriensis sp. nov., Catellatospora coxensis sp. nov. and Catellatospora bangladeshensis sp. nov. and transfer of Catellatospora citrea subsp. methionotrophica Asano and Kawamoto 1988 to Catellatospora methionotrophica sp. nov., comb. nov. Int J Syst Evol Microbiol 56, 393–400.[CrossRef]
    [Google Scholar]
  2. Ara, I. & Kudo, T. ( 2007a; ). Luedemannella gen. nov., a new genus of the family Micromonosporaceae and description of Luedemannella helvata sp. nov. and Luedemannella flava sp. nov. J Gen Appl Microbiol 53, 39–51.[CrossRef]
    [Google Scholar]
  3. Ara, I. & Kudo, T. ( 2007b; ). Krasilnikovia gen. nov., a new genus of the family Micromonosporaceae and description of Krasilnikovia cinnamonea sp. nov. Actinomycetologica 21, 1–10.[CrossRef]
    [Google Scholar]
  4. Ara, I., Matsumoto, A., Bakir, M. A., Kudo, T., Ōmura, S. & Takahashi, Y. ( 2008a; ). Pseudosporangium ferrugineum gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int J Syst Evol Microbiol 58, 1644–1652.[CrossRef]
    [Google Scholar]
  5. Ara, I., Bakir, M. A. & Kudo, T. ( 2008b; ). Transfer of Catellatospora koreensis Lee et al. 2000 as Catelliglobosispora koreensis gen. nov., comb. nov. and Catellatospora tsunoense Asano et al. 1989 as Hamadaea tsunoensis gen. nov., comb. nov., and emended description of the genus Catellatospora Asano and Kawamoto 1986 emend. Lee and Hah 2002. Int J Syst Evol Microbiol 58, 1950–1960.[CrossRef]
    [Google Scholar]
  6. Asano, K. & Kawamoto, I. ( 1986; ). Catellatospora, a new genus of the Actinomycetales. Int J Syst Bacteriol 36, 512–517.[CrossRef]
    [Google Scholar]
  7. Becker, B., Lechevalier, M. P. & Lechevalier, H. A. ( 1965; ). Chemical composition of cell-wall preparation from strains of various form-genera of aerobic actinomycetes. Appl Microbiol 13, 236–243.
    [Google Scholar]
  8. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y. W. ( 2007; ). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259–2261.[CrossRef]
    [Google Scholar]
  9. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. ( 1977; ). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221–230.[CrossRef]
    [Google Scholar]
  10. Couch, J. N. ( 1950; ). Actinoplanes a new genus of the Actinomycetales. J Elisha Mitchell Sci Soc 66, 87–92.
    [Google Scholar]
  11. Felsenstein, J. ( 1981; ). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368–376.[CrossRef]
    [Google Scholar]
  12. Felsenstein, J. ( 1985; ). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.[CrossRef]
    [Google Scholar]
  13. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. ( 1974; ). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54–63.[CrossRef]
    [Google Scholar]
  14. Hasegawa, T., Takizawa, M. & Tanida, S. ( 1983; ). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319–322.[CrossRef]
    [Google Scholar]
  15. Hayakawa, M. & Nonomura, H. ( 1987; ). Humic acid-vitamin agar, a new medium for selective isolation of soil actinomycetes. J Ferment Technol 65, 501–509.[CrossRef]
    [Google Scholar]
  16. Kane, W. D. ( 1966; ). A new genus of Actinoplanaceae, Pilimelia, with a description of two species, Pilimelia terevasa and Pilimelia anulata. J Elisha Mitchell Sci Soc 82, 220–230.
    [Google Scholar]
  17. Kawamoto, I., Oka, T. & Nara, T. ( 1981; ). Cell wall composition of Micromonospora olivasterospora, Micromonospora sagamiensis, and related organisms. J Bacteriol 146, 527–534.
    [Google Scholar]
  18. Kimura, M. ( 1980; ). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111–120.[CrossRef]
    [Google Scholar]
  19. Kluge, A. G. & Farris, J. S. ( 1969; ). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1–32.[CrossRef]
    [Google Scholar]
  20. Koch, C., Kroppenstedt, R. M., Rainey, F. A. & Stackebrandt, E. ( 1996; ). 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae. Int J Syst Bacteriol 46, 765–768.[CrossRef]
    [Google Scholar]
  21. Krasil'nikov, N. A. ( 1938; ). Ray Fungi and Related Organisms Actinomycetales. Moscow. : Akademii Nauk USSR.
    [Google Scholar]
  22. Kroppenstedt, R. M. ( 1985; ). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics (Society for Applied Bacteriology Technical Series vol. 20), pp. 173–199. Edited by Goodfellow, M. & Minnikin, D. E.. New York. : Academic Press.
    [Google Scholar]
  23. Kudo, T., Nakajima, Y. & Suzuki, K. ( 1999; ). Catenuloplanes crispus (Petrolini et al. 1993) comb. nov.: incorporation of the genus Planopolyspora Petrolini 1993 into the genus Catenuloplanes Yokota et al. 1993 with an amended description of the genus Catenuloplanes. . Int J Syst Bacteriol 49, 1853–1860.[CrossRef]
    [Google Scholar]
  24. Lechevalier, H. A. & Lechevalier, M. P. ( 1967; ). Biology of actinomycetes. Annu Rev Microbiol 21, 71–100.[CrossRef]
    [Google Scholar]
  25. Lechevalier, M. P., De Bièvre, C. & Lechevalier, H. A. ( 1977; ). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249–260.[CrossRef]
    [Google Scholar]
  26. Lee, S. D. & Hah, Y. C. ( 2002; ). Proposal to transfer Catellatospora ferruginea and ‘Catellatospora ishikariense’ to Asanoa gen. nov. as Asanoa ferruginea comb. nov. and Asanoa ishikariensis sp. nov., with emended description of the genus Catellatospora. Int J Syst Evol Microbiol 52, 967–972.[CrossRef]
    [Google Scholar]
  27. Maldonado, L. A., Fenical, W., Jensen, P. R., Kauffman, C. A., Mincer, T. J., Ward, A. C., Bull, A. T. & Goodfellow, M. ( 2005; ). Salinispora arenicola gen. nov., sp. nov. and Salinispora tropica sp. nov., obligate marine actinomycetes belonging to the family Micromonosporaceae. Int J Syst Evol Microbiol 55, 1759–1766.[CrossRef]
    [Google Scholar]
  28. Matsumoto, A., Takahashi, Y., Mochizuki, M., Seino, A., Iwai, Y. & Ōmura, S. ( 1998; ). Characterization of actinomycetes isolated from fallen leaves. Actinomycetologica 12, 46–48.[CrossRef]
    [Google Scholar]
  29. Matsumoto, A., Takahashi, Y., Shinose, M., Seino, A., Iwai, Y. & Ōmura, S. ( 2003; ). Longispora albida gen. nov., sp. nov., a novel genus of the family Micromonosporaceae. Int J Syst Evol Microbiol 53, 1553–1559.[CrossRef]
    [Google Scholar]
  30. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. ( 1977; ). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104–117.[CrossRef]
    [Google Scholar]
  31. Monciardini, P., Cavaletti, L., Ranghetti, A., Schumann, P., Rohde, M., Bamonte, R., Sosio, M., Mezzelani, A. & Donadio, S. ( 2009; ). Novel members of the family Micromonosporaceae, Rugosimonospora acidiphila gen. nov., sp. nov. and Rugosimonospora africana sp. nov. Int J Syst Evol Microbiol 59, 2752–2758.[CrossRef]
    [Google Scholar]
  32. Nozawa, Y., Sasaki, N., Arai, K., Kawasaki, Y. & Harada, K. ( 2007; ). Reliable and sensitive analysis of amino acids in the peptidoglycan of actinomycetes using the advanced Marfey's method. J Microbiol Methods 70, 306–311.[CrossRef]
    [Google Scholar]
  33. Okazaki, K., Takahashi, K., Kuzuka, M. & Enokita, R. ( 1995; ). Studies on actinomycetes isolated from plant leaves. Ann Rep Snakyo Res Lab 47, 97–106.
    [Google Scholar]
  34. Ørskov, J. ( 1923; ). Investigations into the Morphology of the Ray Fungi. Copenhagen. : Levin and Munksgaard.
    [Google Scholar]
  35. Qin, S., Li, J., Zhang, Y.-Q., Zhu, W.-Y., Zhao, G.-Z., Xu, L.-H. & Li, W.-J. ( 2009; ). Plantactinospora mayteni gen. nov., sp. nov., a member of the family Micromonosporaceae. Int J Syst Evol Microbiol 59, 2527–2533.[CrossRef]
    [Google Scholar]
  36. Rheims, H., Schumann, P., Rohde, M. & Stackebrandt, E. ( 1998; ). Verrucosispora gifhornensis gen. nov., sp. nov., a new member of the actinobacterial family Micromonosporaceae. Int J Syst Bacteriol 48, 1119–1127.[CrossRef]
    [Google Scholar]
  37. Saito, H. & Miura, K. ( 1963; ). Preparation of transforming deoxyribonucleic acid by phenol treatment. Biochim Biophys Acta 72, 619–629.[CrossRef]
    [Google Scholar]
  38. Saitou, N. & Nei, M. ( 1987; ). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406–425.
    [Google Scholar]
  39. Shirling, E. B. & Gottlieb, D. ( 1966; ). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313–340.[CrossRef]
    [Google Scholar]
  40. Stackebrandt, E., Rainey, F. A. & Ward-Rainey, N. L. ( 1997; ). Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47, 479–491.[CrossRef]
    [Google Scholar]
  41. Takahashi, Y., Matsumoto, A., Seino, A., Ueno, J., Iwai, Y. & Mura, S. ( 2002; ). Streptomyces avermectinius sp. nov., an avermectin-producing strain. Int J Syst Evol Microbiol 52, 2163–2168.[CrossRef]
    [Google Scholar]
  42. Tamaoka, J. & Komagata, K. ( 1984; ). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125–128.[CrossRef]
    [Google Scholar]
  43. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. ( 1983; ). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31–36.[CrossRef]
    [Google Scholar]
  44. Tamura, T., Nakagaito, Y., Nishii, T., Hasegawa, T., Stackebrandt, E. & Yokota, A. ( 1994; ). A new genus of the order Actinomycetales, Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov. Int J Syst Bacteriol 44, 193–203.[CrossRef]
    [Google Scholar]
  45. Tamura, T., Hayakawa, M. & Hatano, K. ( 1997; ). A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. Int J Syst Bacteriol 47, 97–102.[CrossRef]
    [Google Scholar]
  46. Tamura, T., Hayakawa, M. & Hatano, K. ( 2001; ). A new genus of the order Actinomycetales, Virgosporangium gen. nov., with descriptions of Virgosporangium ochraceum sp. nov. and Virgosporangium aurantiacum sp. nov. Int J Syst Evol Microbiol 51, 1809–1816.[CrossRef]
    [Google Scholar]
  47. Tamura, T., Hatano, K. & Suzuki, K. ( 2006; ). A new genus of the family Micromonosporaceae, Polymorphospora gen. nov., with description of Polymorphospora rubra sp. nov. Int J Syst Evol Microbiol 56, 1959–1964.[CrossRef]
    [Google Scholar]
  48. Thawai, C., Tanasupawat, S., Itoh, T. & Kudo, T. ( 2006; ). Actinocatenispora thailandica gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int J Syst Evol Microbiol 56, 1789–1794.[CrossRef]
    [Google Scholar]
  49. Thawai, C., Tanasupawat, S., Suwanborirux, K. & Kudo, T. ( 2010; ). Actinaurispora siamensis gen. nov., sp. nov., a new member of the family Micromonosporaceae. Int J Syst Evol Microbiol 60, 1660–1666.[CrossRef]
    [Google Scholar]
  50. Thiemann, J. E., Pagani, H. & Beretta, G. ( 1967; ). A new genus of the Actinoplanaceae: Dactylosporangium, gen. nov. Arch Mikrobiol 58, 42–52.[CrossRef]
    [Google Scholar]
  51. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. ( 1997; ). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef]
    [Google Scholar]
  52. Tomiyasu, I. ( 1982; ). Mycolic acid composition and thermally adaptative changes in Nocardia asteroides. J Bacteriol 151, 828–837.
    [Google Scholar]
  53. Uchida, K. & Aida, K. ( 1977; ). Acyl type of bacterial cell wall: its simple identification by a colorimetric method. J Gen Appl Microbiol 23, 249–260.[CrossRef]
    [Google Scholar]
  54. Wiese, J., Jiang, Y., Tang, S., Thiel, V., Schmaljohann, R., Xu, L., Jiang, C. & Imhoff, J. F. ( 2008; ). A new member of the family Micromonosporaceae, Planosporangium flavigriseum gen. nov., sp. nov. Int J Syst Evol Microbiol 58, 1324–1331.[CrossRef]
    [Google Scholar]
  55. Yokota, A., Tamura, T., Hasegawa, T. & Huang, L. H. ( 1993; ). Catenuloplanes japonicus gen. nov., sp. nov., nom. rev., a new genus of the order Actinomycetales. Int J Syst Bacteriol 43, 805–812.[CrossRef]
    [Google Scholar]
  56. Zhi, X.-Y., Li, W.-J. & Stackebrandt, E. ( 2009; ). An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59, 589–608.[CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.016477-0
Loading
/content/journal/ijsem/10.1099/ijs.0.016477-0
Loading

Data & Media loading...

Supplements

vol. , part 11, pp. 2652 - 2658

Combined PDF file containing: Maximum-likelihood tree based on 16S rRNA gene sequences showing relationships between K07-0523T and members of family .

Maximum-parsimony tree based on 16S rRNA gene sequences showing relationships between K07-0523T and members of family .

[ PDF] 165 KB



PDF

Most Cited This Month

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error