1887

Abstract

The taxonomic positions of two Gram-positive, endospore-forming rods, strains CCUG 53915 and CCUG 53480, isolated from an industrial clean-room floor and from a human blood sample, respectively, were studied. 16S rRNA gene sequence similarity studies revealed that both isolates clearly clustered with species. Strain CCUG 53915 was most closely related to and , showing 99.4 and 99.2 % 16S rRNA gene sequence similarities to the type strains of these species, respectively. Strain CCUG 53480 showed the highest 16S rRNA gene sequence similarities to the type strains of (98.7 %) and (98.6 %). Strains CCUG 53915 and CCUG 53480 had peptidoglycan type A4 -Lys–-Glu. The quinone systems of both strains were composed predominantly of menaquinone MK-7, with small amounts of MK-8. The polar lipid profiles of both strains consisted of phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine and three unidentified phospholipids. The fatty acid profiles, which comprise anteiso- and iso-branched fatty acids, supported affiliation of the two isolates to the genus . The results of physiological and biochemical tests and DNA–DNA hybridization data allowed a clear phenotypic and genotypic differentiation of both strains from the most closely related species. For this reason, it is proposed that strains CCUG 53915 (=DSM 22204) and CCUG 53480 (=DSM 22203) represent two novel species in the genus , with the names sp. nov. and sp. nov., respectively.

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.014423-0
2010-06-01
2024-04-19
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/60/6/1353.html?itemId=/content/journal/ijsem/10.1099/ijs.0.014423-0&mimeType=html&fmt=ahah

References

  1. An S.-Y., Haga T., Kasai H., Goto K., Yokota A. 2007; Sporosarcina saromensis sp. nov., an aerobic endospore-forming bacterium. Int J Syst Evol Microbiol 57:1868–1871 [CrossRef]
    [Google Scholar]
  2. Claus D., Fahmy F. 1986; Genus Sporosarcina Kluyver and van Niel 1936, 401AL . In Bergey's Manual of Systematic Bacteriology vol 2 pp 1202–1206 Edited by Sneath P. H. A., Mair N. S., Sharpe M. E., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
  3. Claus D., Fahmy F., Rolf H. J., Tosunoglu N. 1983; Sporosarcina halophila sp. nov., an obligate, slightly halophilic bacterium from salt marsh soils. Syst Appl Microbiol 4:496–506 [CrossRef]
    [Google Scholar]
  4. Collins M. D., Pirouz T., Goodfellow M., Minnikin D. E. 1977; Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100:221–230 [CrossRef]
    [Google Scholar]
  5. Gerhardt P., Murray R. G. E., Wood W. A., Krieg N. R. (editors) 1994 Methods for General and Molecular Bacteriology Washington, DC: American Society for Microbiology;
    [Google Scholar]
  6. Groth I., Schumann P., Weiss N., Martin K., Rainey F. A. 1996; Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall. Int J Syst Bacteriol 46:234–239 [CrossRef]
    [Google Scholar]
  7. Kämpfer P., Kroppenstedt R. M. 1996; Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42:989–1005 [CrossRef]
    [Google Scholar]
  8. Kämpfer P., Steiof M., Dott W. 1991; Microbiological characterization of a fuel-oil contaminated site including numerical identification of heterotrophic water and soil bacteria. Microb Ecol 21:227–251 [CrossRef]
    [Google Scholar]
  9. Kämpfer P., Dreyer U., Neef A., Dott W., Busse H.-J. 2003; Chryseobacterium defluvii sp. nov., isolated from wastewater. Int J Syst Evol Microbiol 53:93–97 [CrossRef]
    [Google Scholar]
  10. Kluyver A. J., van Niel C. B. 1936; Prospects for a natural system of classification of bacteria. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg Abt II 94:369–403
    [Google Scholar]
  11. Krishnamurthi S., Bhattacharya A., Mayilraj S., Saha P., Schumann P., Chakrabarti T. 2009; Description of Paenisporosarcina quisquiliarum gen. nov., sp. nov., and reclassification of Sporosarcina macmurdoensis Reddy et al. 2003 as Paenisporosarcina macmurdoensis comb. nov. Int J Syst Evol Microbiol 59:1364–1370 [CrossRef]
    [Google Scholar]
  12. Kwon S.-W., Kim B.-Y., Song J., Weon H.-Y., Schumann P., Tindall B. J., Stackebrandt E., Fritze D. 2007; Sporosarcina koreensis sp. nov. and Sporosarcina soli sp. nov., isolated from soil in Korea. Int J Syst Evol Microbiol 57:1694–1698 [CrossRef]
    [Google Scholar]
  13. Lane D. J. 1991; 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics pp 115–175 Edited by Stackebrandt E., Goodfellow M. Chichester, UK: Wiley;
    [Google Scholar]
  14. Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S. other authors 2004; arb: a software environment for sequence data. Nucleic Acids Res 32:1363–1371 [CrossRef]
    [Google Scholar]
  15. MacKenzie S. L. 1987; Gas chromatographic analysis of amino acids as the N -heptafluorobutyryl isobutyl esters. J Assoc Off Anal Chem 70:151–160
    [Google Scholar]
  16. Minnikin D. E., Collins M. D., Goodfellow M. 1979; Fatty acid and polar lipid composition in the classification of Cellulomonas , Oerskovia and related taxa. J Appl Bacteriol 47:87–95 [CrossRef]
    [Google Scholar]
  17. Nakamura L. K. 1984; Bacillus psychrophilus sp. nov., nom. rev. Int J Syst Bacteriol 34:121–123 [CrossRef]
    [Google Scholar]
  18. Olsen G. J., Matsuda H., Hagstrom R., Overbeek R. 1994; fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci 10:41–48
    [Google Scholar]
  19. Pruesse E., Quast C., Knittel K., Fuchs B. M., Ludwig W., Peplies J., Glöckner F. O. 2007; silva: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with arb. Nucleic Acids Res 35:7188–7196 [CrossRef]
    [Google Scholar]
  20. Reddy G. S. N., Matsumoto G. I., Shivaji S. 2003; Sporosarcina macmurdoensis sp. nov., from a cyanobacterial mat sample from a pond in the McMurdo Dry Valleys, Antarctica. Int J Syst Evol Microbiol 53:1363–1367 [CrossRef]
    [Google Scholar]
  21. Rüger H.-J. 1983; Differentiation of Bacillus globisporus , Bacillus marinus comb. nov., Bacillus aminovorans , and Bacillus insolitus . Int J Syst Bacteriol 33:157–161 [CrossRef]
    [Google Scholar]
  22. Schleifer K. H. 1985; Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18:123–156
    [Google Scholar]
  23. Schleifer K. H., Kandler O. 1972; Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407–477
    [Google Scholar]
  24. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: Molecular Evolutionary Genetics Analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [CrossRef]
    [Google Scholar]
  25. Yoon J.-H., Lee K.-C., Weiss N., Kho Y. H., Kang K. H., Park Y.-H. 2001; Sporosarcina aquimarina sp. nov., a bacterium isolated from seawater in Korea, and transfer of Bacillus globisporus (Larkin and Stokes 1967), Bacillus psychrophilus (Nakamura 1984) and Bacillus pasteurii (Chester 1898) to the genus Sporosarcina as Sporosarcina globispora comb.nov., Sporosarcina psychrophila comb. nov. and Sporosarcina pasteurii comb. nov., and emended description of the genus Sporosarcina . Int J Syst Evol Microbiol 51:1079–1086 [CrossRef]
    [Google Scholar]
  26. Yu Y., Xin Y.-H., Liu H.-C., Chen B., Sheng J., Chi Z.-M., Zhou P.-J., Zhang D.-C. 2008; Sporosarcina antarctica sp. nov., a psychrophilic bacterium isolated from the Antarctic. Int J Syst Evol Microbiol 58:2114–2117 [CrossRef]
    [Google Scholar]
  27. Ziemke F., Höfle M. G., Lalucat J., Rosselló-Mora R. 1998; Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48:179–186 [CrossRef]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.014423-0
Loading
/content/journal/ijsem/10.1099/ijs.0.014423-0
Loading

Data & Media loading...

Supplements

Supplementary material 1

PDF
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error