Vagococcus penaei sp. nov., isolated from spoilage microbiota of cooked shrimp (Penaeus vannamei)

References

1. Al-Ahmad A., Pelz K., Schirrmeister J. F., Hellwig E., Pukall R. 2008; Characterization of the first oral Vagococcus isolate from a root-filled tooth with periradicular lesions. Curr Microbiol 57:235–238 [CrossRef]
   [Google Scholar]
2. Cole J. R., Chai B., Marsh T. L., Farris R. J., Wang Q., Kulam S. A., Chandra S., McGarrell D. M., Schmidt T. M. other authors 2003; The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31:442–443 [CrossRef]
   [Google Scholar]
3. Collins M. D., Ash C., Farrow J. A. E., Wallbanks S., Williams A. M. 1989; 16S ribosomal ribonucleic acid sequence analyses of lactococci and related taxa. Description of Vagococcus fluvialis gen. nov., sp. nov. J Appl Bacteriol 67:453–460 [CrossRef]
   [Google Scholar]
4. Ezaki T., Hashimoto Y., Yabuuchi E. 1989; Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229 [CrossRef]
   [Google Scholar]
5. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [CrossRef]
   [Google Scholar]
6. Fischer W., Arneth-Seifert D. 1998; d-Alanylcardiolipin, a major component of the unique lipid pattern of Vagococcus fluvialis . J Bacteriol 180:2950–2957
   [Google Scholar]
7. Gascuel O. 1997; bionj: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14:685–695 [CrossRef]
   [Google Scholar]
8. Gevers D., Huys G., Swings J. 2001; Applicability of rep-PCR fingerprinting for identification of Lactobacillus species. FEMS Microbiol Lett 205:31–36 [CrossRef]
   [Google Scholar]
9. Hall T. A. 1999; BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95–98
   [Google Scholar]
10. Hashimoto H., Noborisaka R., Yanagawa R. 1974; Distribution of motile streptococci in man, animals and natural environment. Nippon Saikingaku Zasshi 29:387–393 (in Japanese) [CrossRef]
    [Google Scholar]
11. Hoyles L., Lawson P. A., Foster G., Falsen E., Ohlén M., Grainger J. M., Collins M. D. 2000; Vagococcus fessus sp. nov., isolated from a seal and a harbour porpoise. Int J Syst Evol Microbiol 50:1151–1154 [CrossRef]
    [Google Scholar]
12. Jaffrès E., Sohier D., Leroi F., Pilet M. F., Prévost H., Joffraud J. J., Dousset X. 2009; Study of the bacterial ecosystem in tropical cooked and peeled shrimps using a polyphasic approach. Int J Food Microbiol 131:20–29 [CrossRef]
    [Google Scholar]
13. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [CrossRef]
    [Google Scholar]
14. Lawson P. A., Foster G., Falsen E., Ohlén M., Collins M. D. 1999; Vagococcus lutrae sp. nov., isolated from the common otter ( Lutra lutra ). Int J Syst Bacteriol 49:1251–1254 [CrossRef]
    [Google Scholar]
15. Lawson P. A., Falsen E., Cotta M. A., Whitehead T. R. 2007; Vagococcus elongatus sp. nov., isolated from a swine-manure storage pit. Int J Syst Evol Microbiol 57:751–754 [CrossRef]
    [Google Scholar]
16. Mesbah M., Premachandran U., Whitman W. B. 1989; Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159–167 [CrossRef]
    [Google Scholar]
17. Michel C., Pelletier C., Boussaha M., Douet D. G., Lautraite A., Tailliez P. 2007; Diversity of lactic acid bacteria associated with fish and the fish farm environment, established by amplified rRNA gene restriction analysis. Appl Environ Microbiol 73:2947–2955 [CrossRef]
    [Google Scholar]
18. Pot B., Devriese L. A., Hommez J., Miry C., Vandemeulebroecke K., Kersters K., Haesebrouck F. 1994; Characterization and identification of Vagococcus fluvialis strains isolated from domestic animals. J Appl Bacteriol 77:362–369 [CrossRef]
    [Google Scholar]
19. Ruiz-Zarzuela I., de Bias I., Girones O., Ghittino C., Muazquiz J. L. 2005; Isolation of Vagococcus salmoninarum in rainbow trout, Oncorhynchus mykiss (Walbaum), broodstocks: characterization of the pathogen. Vet Res Commun 29:553–562 [CrossRef]
    [Google Scholar]
20. Sasser M. 1990 Identification of bacteria by gas chromatography of cellular fatty acids , MIDI Technical Note 101 Newark, DE: MIDI Inc;
    [Google Scholar]
21. Schleifer K. H. 1985; Analysis of the chemical composition and primary structure of murein. Methods Microbiol 18:123–156
    [Google Scholar]
22. Schleifer K. H., Kandler O. 1972; Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36:407–477
    [Google Scholar]
23. Schmidtke L. M., Carson J. 1994; Characteristics of Vagococcus salmoninarum isolated from diseased salmonid fish. J Appl Bacteriol 77:229–236 [CrossRef]
    [Google Scholar]
24. Shewmaker P. L., Steigerwalt A. G., Morey R. E., Carvalho M. G. S., Elliott J. A., Joyce K., Barrett T. J., Teixeira L. M., Facklam R. R. 2004 Vagococcus carniphilus sp. nov., isolated from ground beef. Int J Syst Evol Microbiol 54, 1505–1510 [CrossRef]
25. Stackebrandt E., Goebel B. M. 1994; Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846–849 [CrossRef]
    [Google Scholar]
26. Stackebrandt E., Frederiksen W., Garrity G. M., Grimont P. A. D., Kämpfer P., Maiden M. C. J., Nesme X., Rosselló-Mora R, Swings J. other authors 2002; Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52:1043–1047 [CrossRef]
    [Google Scholar]
27. Tamura K., Dudley J., Nei M., Kumar S. 2007; mega4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24:1596–1599 [CrossRef]
    [Google Scholar]
28. Teixeira L. M., Carvalho M. G. S., Merquior V. L. C., Steigerwalt A. G., Brenner D. J., Facklam R. R. 1997; Phenotypic and genotypic characterization of Vagococcus fluvialis , including strains isolated from human sources. J Clin Microbiol 35:2778–2781
    [Google Scholar]
29. Valcheva R., Ferchichi M. F., Korakli M., Ivanova I., Gänzle M. G., Vogel R. F., Prévost H., Onno B., Dousset X. 2006; Lactobacillus nantensis sp. nov., isolated from French wheat sourdough. Int J Syst Evol Microbiol 56:587–591 [CrossRef]
    [Google Scholar]
30. Wallbanks S., Martinez-Murcia A. J., Fryer J. L., Phillips B. A., Collins M. D. 1990; 16S rRNA sequence determination for members of the genus Carnobacterium and related lactic acid bacteria and description of Vagococcus salmoninarum sp. nov. Int J Syst Bacteriol 40:224–230 [CrossRef]
    [Google Scholar]
31. Wayne L. G., Brenner D. J., Colwell R. R., Grimont P. A. D., Kandler O., Krichevsky M. I., Moore L. H., Moore W. E. C., Murray R. G. E. other authors 1987; International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464 [CrossRef]
    [Google Scholar]