1887

Abstract

A polyphasic study was undertaken to determine the taxonomic status of six strains received as . The strains had chemotaxonomic and morphological properties typical of members of the genus and formed distinct phyletic lines in the 16S rRNA gene tree. These strains were distinguished from one another and from phylogenetically close neighbours using a combination of phenotypic properties. The combined genotypic and phenotypic data showed that all six strains form distinct centres of taxonomic variation within the genus . The following novel species are proposed to accommodate the strains: sp. nov. (type strain DSM 41909 =NRRL 18513), sp. nov., comb. nov. (type strain DSM 41683=NRRL B-2347), sp. nov. (type strain DSM 40822 =NBRC 13981), sp. nov., comb. nov. (type strain DSM 41427 =NRRL 2666), sp. nov. (type strain DSM 41911 =NRRL 5739) and sp. nov. (type strain DSM 40632 =NRRL B-1503).

Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.012161-0
2010-04-01
2021-03-01
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/60/4/769.html?itemId=/content/journal/ijsem/10.1099/ijs.0.012161-0&mimeType=html&fmt=ahah

References

  1. Altschul S. F., Madden T. L., Schaffer A. A., Zhang J., Zhang Z., Miller W., Lipman D. J. 1997; Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 [CrossRef]
    [Google Scholar]
  2. Aoki A., Fukuda R., Nakayabu T., Ishibashi K., Takeichi C., Ishida M. 1976; Antibiotic substances . US Patent 3,950,360.
  3. Atalan E., Manfio G. P., Ward A. C., Kroppenstedt R. M., Goodfellow M. 2000; Biosystematic studies on novel streptomycetes from soil. Antonie van Leeuwenhoek 77:337–353 [CrossRef]
    [Google Scholar]
  4. Bull A. T., Stach J. E. M., Ward A. C., Goodfellow M. 2005; Marine actinobacteria: perspectives, challenges and future directions. Antonie van Leeuwenhoek 87:37–42 [CrossRef]
    [Google Scholar]
  5. De Vos P., Trüper H. G. 2000; Judicial Commission of the International Committee on Systematic Bacteriology. IXth International (IUMS) Congress of Bacteriology and Applied Microbiology. Minutes of the meetings 14: 15 and 18 August 1999; Sydney, Australia. Int J Syst Evol Microbiol 50 2239–2244 [CrossRef]
    [Google Scholar]
  6. Dietz A., Mathews J. 1962; Taxonomy of carbon replication. I. An examination of Streptomyces hygroscopicus . Appl Microbiol 10:258–263
    [Google Scholar]
  7. Dietz A., Mathews J. 1969; Scanning electron microscopy of selected members of the Streptomyces hygroscopicus group. Appl Microbiol 18:694–696
    [Google Scholar]
  8. DSMZ 1998 Catalogue of Strains Braunschweig: DSMZ;
    [Google Scholar]
  9. Duangmal K., Ward A. C., Goodfellow M. 2005; Selective isolation of members of the Streptomyces violaceoruber clade from soil. FEMS Microbiol Lett 245:321–327 [CrossRef]
    [Google Scholar]
  10. Felsenstein J. 1981; Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376
    [Google Scholar]
  11. Felsenstein J. 1985; Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791 [CrossRef]
    [Google Scholar]
  12. Felsenstein J. 1993 phylip (phylogeny inference package) version 3.5c Department of Genome Sciences, University of Washington; Seattle, USA:
    [Google Scholar]
  13. Fitch W. M., Margoliash E. 1967; Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155:279–284 [CrossRef]
    [Google Scholar]
  14. Goodfellow M., Kumar Y., Labeda D. P., Sembiring L. 2007; The Streptomyces violaceusniger clade: a home for streptomycetes with rugose ornamented spores. Antonie van Leeuwenhoek 92:173–197 [CrossRef]
    [Google Scholar]
  15. Haber C. L., Heckaman C. L., Li G. P., Thompson D. P., Whaley H. A., Wiley V. H. 1991; Development of a mechanism of action-based screen for anthelmintic microbial metabolites with avermectin like activity and isolation of milbemycin-producing Streptomyces strains. Antimicrob Agents Chemother 35:1811–1817 [CrossRef]
    [Google Scholar]
  16. Hütter R. 1967; Systematik der Streptomyceten unter besonderer Berücksiehtung der von ihnen gebildetern Antibiotika . Bibliotheka Mikrobiologica Fasc. vol. 6: Basel: S; Karger (in German
    [Google Scholar]
  17. Jukes T. H., Cantor C. R. 1969; Evolution of protein molecules. In Mammalian Protein Metabolism vol. 3 pp 21–132 Edited by Munro H. N. New York: Academic Press;
    [Google Scholar]
  18. Kluge A. G., Farris F. S. 1969; Quantitative phyletics and evolution of anurans. Syst Zool 18:1–12 [CrossRef]
    [Google Scholar]
  19. Kumar Y., Goodfellow M. 2008; Five new members of the Streptomyces violaceusniger 16S rRNA gene clade: Streptomyces castelarensis comb.nov., S. himastatinicus sp. nov., S.mordarskii sp. nov., S. rapamycinicus sp.nov. and S. ruanii sp. nov.. Int J Syst Evol Microbiol 58:1369–1378 [CrossRef]
    [Google Scholar]
  20. Kumar Y., Aiemsum-ang P., Ward A. C., Goodfellow M. 2007; Diversity and geographical distribution of members of the Streptomyces violaceusniger 16S rRNA gene clade detected by clade specific PCR primers. FEMS Microbiol Ecol 62:54–63 [CrossRef]
    [Google Scholar]
  21. Lanoot B., Vancanneyt M., Cleenwerck I., Wang L., Li W., Liu Z., Swings J. 2002; The search for synonyms among streptomycetes by using SDS-PAGE of whole-cell proteins. Emendation of the species Streptomyces aurantiacus , Streptomyces cacaoi subsp. cacaoi , Streptomyces caeruleus and Streptomyces violaceus . Int J Syst Evol Microbiol 52:823–829 [CrossRef]
    [Google Scholar]
  22. Lanoot B., Vancanneyt M., Dawyndt P., Cnockaert M., Zhang J., Huang Y., Liu Z., Swings J. 2004; BOX-PCR fingerprinting as a powerful tool to reveal synonymous names in the genus Streptomyces . Emended descriptions are proposed for the species Streptomyces cinereorectus , S. fradiae , S. tricolor , S. columbiensis , S. filamentosus , S. vinaceus and S. phaeopurpureus . Syst Appl Microbiol 27:84–92 [CrossRef]
    [Google Scholar]
  23. Lanoot B., Vancanneyt M., Hoste B., Vandameulebroecke K., Cnockaert M. C., Dawyndt P., Liu Z., Huang Y., Swings J. 2005; Grouping streptomycetes using 16S-ITS RFLP fingerprinting. Res Microbiol 156:755–762 [CrossRef]
    [Google Scholar]
  24. Lapage S. P., Sneath P. H. A., Lessel E. F., Skerman V. B. D., Seeliger H. P. R., Clark W. A. (editors) 1992; International Code of Nomenclature of Bacteria (1990 Revision) . Washington, DC: American Society for Microbiology;
  25. Liu Z., Shi Y., Zhang Y., Zhou Z., Lu Z., Li W., Huang Y., Rodriguez C., Goodfellow M. 2005; Classification of Streptomyces griseus (Krainsky 1914) Waksman and Henrici 1948 and related species and the transfer of ‘ Microstreptospora cinerea ’ to the genus Streptomyces as Streptomyces yanii sp. nov. Int J Syst Evol Microbiol 55:1605–1610 [CrossRef]
    [Google Scholar]
  26. Manfio G. P., Zakrzewska-Czerwinska J., Atalan E., Goodfellow M. 1995; Towards minimal standards for the description of Streptomyces species. Biotekhnologia 7:8242–283
    [Google Scholar]
  27. Manfio G. P., Atalan E., Zakrzewska-Czerwinska J., Mordarski M., Rodriguez C., Collins M. D., Goodfellow M. 2003; Classification of novel soil streptomycetes as Streptomyces aureus sp.nov., Streptomyces laceyi sp. nov. and Streptomyces sanglieri sp. nov. Antonie van Leeuwenhoek 83:245–255 [CrossRef]
    [Google Scholar]
  28. Ohmori T., Okanishi M., Kawaguchi H. 1962; Glebomycin, a new member of the steptomycin class. III. Taxonomic studies on Strain No 12096, producer of glebomycin. J Antibiot A 15:21–27
    [Google Scholar]
  29. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–428
    [Google Scholar]
  30. Sembiring L., Ward A. C., Goodfellow M. 2000; Selective isolation and characterisation of members of the Streptomyces violaceusniger clade associated with the roots of Paraserianthes falcataria . Antonie van Leeuwenhoek 78:353–366 [CrossRef]
    [Google Scholar]
  31. Shirling E. B., Gottlieb D. 1966; Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340 [CrossRef]
    [Google Scholar]
  32. Staneck J. L., Roberts G. D. 1974; Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28:226–231
    [Google Scholar]
  33. Strohl W. 2004; Antimicrobials. In Microbial Diversity and Bioprospecting pp 288–313 Edited by Bull A. T. Washington, DC: American Society for Microbiology;
    [Google Scholar]
  34. Sun W., Huang Y., Zhang Y.-Q., Liu Z.-H. 2007; Streptomyces emeiensis sp. nov., a novel streptomycete from soil in China. Int J Syst Evol Microbiol 57:1635–1639 [CrossRef]
    [Google Scholar]
  35. Tresner H. D., Backus E. J. 1956; A broadened concept of the characteristics of Streptomyces hygroscopicus . Appl Microbiol 4:243–250
    [Google Scholar]
  36. Vavra J. J., Dietz A., Churchill B. W., Shiminoff P., Koepsell H. J. 1959; Psicofuranine. III. Production and biological studies. Antibiot Chemother 9:427–431
    [Google Scholar]
  37. Ward A. C., Goodfellow M. 2004; Phylogeny and functionality: taxonomy as a roadmap to genes. In Microbial Diversity and Bioprospecting pp 288–313 Edited by Bull A. T. Washington, DC: American Society for Microbiology;
    [Google Scholar]
  38. Williams S. T., Goodfellow M., Alderson G., Wellington E. M. H., Sneath P. H. A., Sackin M. J. 1983; Numerical classification of Streptomyces and related genera. J Gen Microbiol 129:1743–1813
    [Google Scholar]
  39. Xu C., Wang L., Cui Q., Huang Y., Liu Z., Zhang G., Goodfellow M. 2006; Novel neutrotolerant acidophilic Streptomyces species isolated from a soil in China: Streptomyces guanduensis sp. nov., Streptomyces paucisporeus sp. nov., Streptomyces rubidus sp.nov. and Streptomyces yanglinensis sp. nov. Int J Syst Evol Microbiol 56:1109–1115 [CrossRef]
    [Google Scholar]
  40. Yao R. C., Hamill R. L. 1993; Polyether antibiotic . US Patent 5,242,814.
  41. Yüntsen H., Ohkuma K., Ishii Y., Yonehara H. 1956; Studies on angustmycin. J Antibiot (Tokyo 9:195–201
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.012161-0
Loading
/content/journal/ijsem/10.1099/ijs.0.012161-0
Loading

Data & Media loading...

Most cited this month Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error