1887

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY logo

Volume 59, Issue 11

sp. nov., isolated from marine sediment Free

Abstract

A -like bacterium, strain KMM 3893, was isolated from a marine sandy sediment collected close to shore from the Sea of Japan and subjected to a phenotypic and phylogenetic study. Comparative 16S rRNA gene sequence analysis confirmed the novel strain's assignment to the genus Strain KMM 3893 constituted a separate phyletic line in the genus , sharing <97 % sequence similarity with respect to other recognized species. Chemotaxonomically, strain KMM 3893 contained the predominant fatty acids C 7, C 7 and C and had a DNA G+C content of 50.0 mol%. On the basis of the phylogenetic analysis and physiological and biochemical characterization, strain KMM 3893 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is KMM 3893 (=NRIC 0752 =JCM 15737).

  • Published Online:
© SGM
Loading

Article metrics loading...

/content/journal/ijsem/10.1099/ijs.0.011304-0
2009-11-01
2024-04-25
Loading full text...

Full text loading...

/deliver/fulltext/ijsem/59/11/2834.html?itemId=/content/journal/ijsem/10.1099/ijs.0.011304-0&mimeType=html&fmt=ahah

References

  1. Baumann, L., Baumann, P., Mandel, M. & Allen, R. D.(1972). Taxonomy of aerobic marine eubacteria. J Bacteriol 110, 402–429. [Google Scholar]
  2. Bligh, E. G. & Dyer, W. J.(1959). A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37, 911–917.[CrossRef] [Google Scholar]
  3. Gerhardt, P., Murray, R. G. E., Wood, W. A. & Krieg, N. R. (editors)(1994).Methods for General and Molecular Bacteriology. Washington, DC: American Society for Microbiology.
  4. Gupta, P., Chaturvedi, P., Pradhan, S., Delille, D. & Shivaji, S.(2006).Marinomonas polaris sp. nov., a psychrohalotolerant strain isolated from coastal sea water off the subantarctic Kerguelen islands. Int J Syst Evol Microbiol 56, 361–364.[CrossRef] [Google Scholar]
  5. Ivanova, E. P., Onyshchenko, O. M., Christen, R., Lysenko, A. M., Zhukova, N. V., Shevchenko, L. S. & Kiprianova, E. A.(2005).Marinomonas pontica sp. nov., isolated from the Black Sea. Int J Syst Evol Microbiol 55, 275–279.[CrossRef] [Google Scholar]
  6. Lau, K. W. K., Ren, J., Wai, N. L. M., Lau, S. C. L., Qian, P.-Y., Wong, P.-K. & Wu, M.(2006).Marinomonas ostreistagni sp. nov., isolated from a pearl-oyster culture pond in Sanya, Hainan Province, China. Int J Syst Evol Microbiol 56, 2271–2275.[CrossRef] [Google Scholar]
  7. Leifson, E.(1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183–1184. [Google Scholar]
  8. Macián, M. C., Arahal, D. R., Garay, E. & Pujalte, M. J.(2005).Marinomonas aquamarina sp. nov., isolated from oysters and seawater. Syst Appl Microbiol 28, 145–150.[CrossRef] [Google Scholar]
  9. Marmur, J. & Doty, P.(1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109–118.[CrossRef] [Google Scholar]
  10. Mikhailov, V. V., Romanenko, L. A. & Ivanova, E. P.(2006). The genus Alteromonas and related proteobacteria. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 6, pp. 597–645. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
  11. Owen, R. J., Hill, L. R. & Lapage, S. P.(1969). Determination of DNA base composition from melting profiles in dilute buffers. Biopolymers 7, 503–516.[CrossRef] [Google Scholar]
  12. Pearson, W. R. & Lipman, D. J.(1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444–2448.[CrossRef] [Google Scholar]
  13. Prabagaran, S. R., Suresh, K., Manorama, R., Delille, D. & Shivaji, S.(2005).Marinomonas ushuaiensis sp. nov., isolated from coastal sea water in Ushuaia, Argentina, sub-Antarctica. Int J Syst Evol Microbiol 55, 309–313.[CrossRef] [Google Scholar]
  14. Romanenko, L. A., Uchino, M., Mikhailov, V. V., Zhukova, N. V. & Uchimura, T.(2003).Marinomonas primoryensis sp. nov., a novel psychrophile isolated from coastal sea-ice in the Sea of Japan. Int J Syst Evol Microbiol 53, 829–832.[CrossRef] [Google Scholar]
  15. Romanenko, L. A., Schumann, P., Rohde, M., Mikhailov, V. V. & Stackebrandt, E.(2004).Reinekea marinisedimentorum gen. nov., sp. nov., a novel gammaproteobacterium from marine coastal sediments. Int J Syst Evol Microbiol 54, 669–673.[CrossRef] [Google Scholar]
  16. Romanenko, L. A., Uchino, M., Falsen, E., Frolova, G. M., Zhukova, N. V. & Mikhailov, V. V.(2005).Pseudomonas pachastrellae sp. nov. isolated from a marine sponge. Int J Syst Evol Microbiol 55, 919–924.[CrossRef] [Google Scholar]
  17. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K.(1997). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47, 289–298.[CrossRef] [Google Scholar]
  18. Smibert, R. M. & Krieg, N. R.(1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607–655. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
  19. Solano, F. & Sanchez-Amat, A.(1999). Studies on the phylogenetic relationships of melanogenic marine bacteria: proposal of Marinomonas mediterranea sp. nov. Int J Syst Bacteriol 49, 1241–1246.[CrossRef] [Google Scholar]
  20. Stackebrandt, E. & Ebers, J.(2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33, 152–155. [Google Scholar]
  21. Stackebrandt, E. & Goebel, B. M.(1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846–849.[CrossRef] [Google Scholar]
  22. Tamura, K., Dudley, J., Nei, M. & Kumar, S.(2007).mega 4: molecular evolutionary genetics analysis (mega) software version 4.0. Mol Biol Evol 24, 1596–1599.[CrossRef] [Google Scholar]
  23. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G.(1997). The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876–4882.[CrossRef] [Google Scholar]
  24. Van Landschoot, A. & De Ley, J.(1983). Intra- and intergeneric similarities of the rRNA cistrons of Alteromonas, Marinomonas (gen. nov.) and some other gram-negative bacteria. J Gen Microbiol 129, 3057–3074. [Google Scholar]
  25. Yoon, J.-H., Kand, S.-J. & Oh, T.-K.(2005).Marinomonas dokdonensis sp. nov., isolated from sea water. Int J Syst Evol Microbiol 55, 2303–2307.[CrossRef] [Google Scholar]
  26. Zhang, D. C., Li, H. R., Xin, Y. H., Liu, H. C., Chen, B., Chi, Z. M., Zhou, P. J. & Yu, Y.(2008).Marinomonas arctica sp. nov., a psychrotolerant bacterium isolated from the Arctic. Int J Syst Evol Microbiol 58, 1715–1718.[CrossRef] [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/ijsem/10.1099/ijs.0.011304-0
Loading
Marinomonas arenicola sp. nov., isolated from marine sediment
Int J Syst Evol Microbiol 59, 2834 (2009); https://doi.org/10.1099/ijs.0.011304-0
/content/journal/ijsem/10.1099/ijs.0.011304-0
/content/journal/ijsem/10.1099/ijs.0.011304-0
Loading

Data & Media loading...

Supplements

vol. , part 11, pp. 2834 - 2838

Maximum-parsimony tree based on 16S rRNA gene sequences showing the phylogenetic relationships between strain KMM 3893 and species. [PDF](37 KB)

PDF

Most cited Most Cited RSS feed

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error